Software

Imaris

• Imaris for Core Facilities: Workstation in the Facility
• Imaris Viewer
  • A free 3D/4D microscopy image viewer for viewing raw images as well as those analysis within Imaris
  • Click here to download

Fiji/ImageJ (Fiji is just Imagej)

• A free downloadable open source image processing package based on ImageJ

Zeiss

• Zeiss ZEN Blue and Black: Workstation in the Facility
• Arivis Pro/Arivis Cloud: Workstation in the Facility
• ZEN Lite for free download
  • Free version of ZEN for basic image acquisition and analysis
  • For viewing, enhancing, and processing Zeiss .czi files obtained on Facility’s Zeiss confocal, light sheet, and Axiozoom microscopes

Nikon

• NIS-Elements Viewer
  • A free downloadable proprietary software for viewing images collected on our Nikon SIM/STORM super resolution microscope
  • For viewing and converting Nikon .nd2 files

Olympus

• Fluoview Viewer
  • For viewing images saved with the FV file format (OIF, OIB, FV Multi-Tiff) on our Olympus FV1000/FV10i/BX61 microscopes.
  • Click here to download

Leica

• Application Suite X (LAS X)
  • Application to open images acquired on our Leica DIVE multiphoton microscope.
  • Click here to download

Nyquist Rate & PSF Calculator

• Scientific Volume Imaging provides a free online Nyquist Rate and PSF Calculator.

• Download android app here.

Avizo

• Avzio is available to all Penn Staters through ICDS with a ROAR account

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