Francisco Dini-Andreote

Assistant Professor of Plant Science

Francisco Dini-Andreote

Research Summary

Microbiome, plant-microbe interactions, and community ecology. Harnessing the plant microbiome to enhance protection against biotic and abiotic stresses.

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Huck Affiliations

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Publication Tags

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Soil Microbiota Temperature Probiotics Climate Change Rhizosphere Nitrogen Ecosystem Coral Reefs Effect Soils Plastics Bleaching Mulch Ecology Stochastic Processes Coral Salts Wetlands Niche Corals Niches Anthozoa Microbiome Bacterial Communities

Most Recent Publications

Effects of plant tissue permeability on invasion and population bottlenecks of a phytopathogen

Gaofei Jiang, Yuling Zhang, Min Chen, Josep Ramoneda, Liangliang Han, Yu Shi, Rémi Peyraud, Yikui Wang, Xiaojun Shi, Xinping Chen, Wei Ding, Alexandre Jousset, Yasufumi Hikichi, Kouhei Ohnishi, Fang Jie Zhao, Yangchun Xu, Qirong Shen, Francisco Dini-Andreote, Yong Zhang, Zhong Wei, 2024, Nature Communications

Biotic and abiotic factors interplay in structuring the dynamics of microbial co-occurrence patterns in tropical mountainsides

Hao Wu, Tianheng Gao, Francisco Dini-Andreote, Nengwen Xiao, Lu Zhang, Ismael Aaron Kimirei, Jianjun Wang, 2024, Environmental Research

Investigating antibiotic free feed additives for growth promotion in poultry- Effects on performance and microbiota

Ana Fonseca, Sophia Kenney, Emily Van Syoc, Stephanie Bierly, Francisco Dini-Andreote, Justin Silverman, J Boney, Erika Ganda, 2024, Poultry Science

Body size mediates the functional potential of soil organisms by diversity and community assembly across soil aggregates

Guofan Zhu, Lu Luan, Shungui Zhou, Francisco Dini-Andreote, Mohammad Bahram, Yunfeng Yang, Stefan Geisen, Jie Zheng, Shaopeng Wang, Yuji Jiang, 2024, Microbiological Research

Partitioning the effects of coffee-Urochloa intercropping on soil microbial properties at a centimeter-scale

Luana Bresciani, Caio César Gomes Freitas, Felipe Martins do Rêgo Barros, Fernando Dini Andreote, Francisco Dini-Andreote, 2024, Applied Soil Ecology

Effects of soil type and salinity levels on the performance and bacteriome of the halophyte Atriplex nummularia (old man saltbush)

Douglas Alfradique Monteiro, Gordon F. Custer, Luiz Fernando Martins, Fabiano de Carvalho Balieiro, Francisco Dini-Andreote, Caio Tavora Coelho da Costa Rachid, 2024, Plant and Soil

Integrating variation in bacterial-fungal co-occurrence network with soil carbon dynamics

Lijun Chen, Francisco Dini-Andreote, Hongqiang Liu, Huaxiang Wang, Alex Dumbrell, Zhengye Wang, Xingyu Chen, Fangfang Chen, Xiaolong Chen, Lichao Wu, Yuji Jiang, 2024, Journal of Applied Ecology on p. 36-50

Unraveling the importance of top-down predation on bacterial diversity at the soil aggregate level

Yuji Jiang, Shuzhen Li, Andrew D. Barnes, Jia Liu, Guofan Zhu, Lu Luan, Francisco Dini-Andreote, Stefan Geisen, Bo Sun, 2023, Geoderma

Fossil-fuel-dependent scenarios could lead to a significant decline of global plant-beneficial bacteria abundance in soils by 2100

Pengfa Li, Leho Tedersoo, Thomas W. Crowther, Alex J. Dumbrell, Francisco Dini-Andreote, Mohammad Bahram, Lu Kuang, Ting Li, Meng Wu, Yuji Jiang, Lu Luan, Muhammad Saleem, Franciska T. de Vries, Zhongpei Li, Baozhan Wang, Jiandong Jiang, 2023, Nature Food on p. 996-1006

Modeling soil bacterial diversity: challenges and opportunities

Lu Luan, Francisco Dini-Andreote, Bo Sun, Yuji Jiang, 2023, Trends in Microbiology on p. 885-888

Most-Cited Papers

Disentangling mechanisms that mediate the balance between stochastic and deterministic processes in microbial succession

Francisco Dini-Andreote, James C. Stegen, Jan Dirk Van Elsas, Joana Falcão Salles, 2015, Proceedings of the National Academy of Sciences of the United States of America on p. E1326-E1332

Effects of plastic mulch film residues on wheat rhizosphere and soil properties

Yueling Qi, Adam Ossowicki, Xiaomei Yang, Esperanza Huerta Lwanga, Francisco Dini-Andreote, Violette Geissen, Paolina Garbeva, 2020, Journal of Hazardous Materials on p. 121711

Ecology and evolution of plant microbiomes

Viviane Cordovez, Francisco Dini-Andreote, Víctor J. Carrión, Jos M. Raaijmakers, 2019, Annual Review of Microbiology on p. 69--88

Marine probiotics: increasing coral resistance to bleaching through microbiome manipulation

Phillipe M. Rosado, Deborah C.A. Leite, Gustavo A.S. Duarte, Ricardo M. Chaloub, Guillaume Jospin, Ulisses Nunes da Rocha, João P. Saraiva, Francisco Dini-Andreote, Jonathan A. Eisen, David G. Bourne, Raquel S. Peixoto, 2019, ISME Journal on p. 921-936

Community Assembly Processes of the Microbial Rare Biosphere

Xiu Jia, Francisco Dini-Andreote, Joana Falcão Salles, 2018, Trends in Microbiology on p. 738-747

Dynamics of bacterial community succession in a salt marsh chronosequence: Evidences for temporal niche partitioning

Francisco Dini-Andreote, Michele De Cássia Pereira E Silva, Xavier Triadó-Margarit, Emilio O. Casamayor, Jan Dirk Van Elsas, Joana Falcão Salles, 2014, ISME Journal on p. 1989-2001

The impact of failure: Unsuccessful bacterial invasions steer the soil microbial community away from the invader's niche

C. A. Mallon, X. Le Roux, G. S. Van Doorn, F. Dini-Andreote, F. Poly, J. F. Salles, 2018, ISME Journal on p. 728-741

Organism body size structures the soil microbial and nematode community assembly at a continental and global scale

Lu Luan, Yuji Jiang, Menghua Cheng, Francisco Dini-Andreote, Yueyu Sui, Qinsong Xu, Stefan Geisen, Bo Sun, 2020, Nature Communications on p. 6406

Climate change affects key nitrogen-fixing bacterial populations on coral reefs

Henrique F. Santos, Flávia L. Carmo, Gustavo Duarte, Francisco Dini-Andreote, Clovis B. Castro, Alexandre S. Rosado, Jan Dirk Van Elsas, Raquel S. Peixoto, 2014, ISME Journal on p. 2272-2279

Endophytes: The Second Layer of Plant Defense

Francisco Dini-Andreote, 2020, Trends in Plant Science on p. 319-322

News Articles Featuring Francisco Dini-Andreote

Apr 12, 2024

Probiotic feed additive boosts growth, health in poultry in place of antibiotics

Antimicrobial resistance is an increasingly serious threat for public health, and the use of antimicrobials in livestock feed has been a major contributing factor in the emergence and spread of antimicrobial resistance to many drugs, according to the U.S. National Institutes of Health.

Full Article

Feb 16, 2024

Common plant could help reduce food insecurity, researchers find

Fast-growing aquatic fern has the nutritional content to serve as a potentially vital food source after a catastrophe and could be relevant now

Full Article

Dec 06, 2023

Beneficial plant bacteria likely to decline due to climate change

Bacteria that benefit plants are thought to be a critical contributor to crops and ecosystems, but climate change may reduce their numbers

Full Article

Dec 05, 2023

Microbes essential to plants are disappearing due to global warming

A new study predicts that plant-friendly microbes could be hindered by global warming

Full Article

Nov 20, 2023

Researchers predict climate change-driven reduction in beneficial plant microbes

Bacteria that benefit plants are thought to be a critical contributor to crops and other ecosystems, but climate change may reduce their numbers, according to a new study by an international team of researchers. They published their findings in Nature Food.

Full Article

Feb 27, 2023

New predictive models developed for bacterial diversity of soils

A new set of quantitative models that incorporates pH into the metabolic theory of ecology (MTE) has been developed by an international team that includes Penn State assistant professor of plant science Francisco Dini-Andreote.

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Oct 19, 2021

Grant to fund research on biological approach to manage soil pathogens and pests

In an effort to boost the profitability and sustainability of organic specialty crop productions, a team of scientists is improving and optimizing a method for controlling soilborne pests and pathogens and promoting soil health that prevents oxygen from entering the soil.

Full Article