Marta Tomaszkiewicz
Assistant Research Professor
-
302 Wartik Lab
University Park, PA - mat19@psu.edu
- 814-863-2185
Huck Affiliations
Publication Tags
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Genes Y Chromosome Gene Expression Genome Chromosomes Gene Dosage Chromosome Hominidae Gene Dosage Pan Troglodytes Recovery Family Chromosomes, Human, Y Pongidae Haplotypes Dna Rna Testis Haploidy Y Linked Genes Pan Paniscus Nucleotides Copy Number Variation RegulationMost Recent Publications
Targeted sequencing of ampliconic gene transcripts from total human male testis RNA.
Marta Tomaszkiewicz, K Makova,
The complete sequence of a human Y chromosome
Arang Rhie, Sergey Nurk, Monika Cechova, Savannah J. Hoyt, Dylan J. Taylor, Nicolas Altemose, Paul W. Hook, Sergey Koren, Mikko Rautiainen, Ivan A. Alexandrov, Jamie Allen, Mobin Asri, Andrey V. Bzikadze, Nae Chyun Chen, Chen Shan Chin, Mark Diekhans, Paul Flicek, Giulio Formenti, Arkarachai Fungtammasan, Carlos Garcia Giron, Erik Garrison, Ariel Gershman, Jennifer L. Gerton, Patrick G.S. Grady, Andrea Guarracino, Leanne Haggerty, Reza Halabian, Nancy F. Hansen, Robert Scott Harris, Gabrielle A. Hartley, William T. Harvey, Marina Haukness, Jakob Heinz, Thibaut Hourlier, Robert M. Hubley, Sarah E. Hunt, Stephen Hwang, Miten Jain, Rupesh K. Kesharwani, Alexandra P. Lewis, Heng Li, Glennis A. Logsdon, Julian K. Lucas, Wojciech Makalowski, Christopher Markovic, Fergal J. Martin, Ann M. Mc Cartney, Rajiv C. McCoy, Jennifer McDaniel, Brandy M. McNulty, Paul Medvedev, Alla Mikheenko, Katherine M. Munson, Terence D. Murphy, Hugh E. Olsen, Nathan D. Olson, Luis F. Paulin, David Porubsky, Tamara Potapova, Fedor Ryabov, Steven L. Salzberg, Michael E.G. Sauria, Fritz J. Sedlazeck, Kishwar Shafin, Valery A. Shepelev, Alaina Shumate, Jessica M. Storer, Likhitha Surapaneni, Angela M. Taravella Oill, Françoise Thibaud-Nissen, Winston Timp, Marta Tomaszkiewicz, Mitchell R. Vollger, Brian P. Walenz, Allison C. Watwood, Matthias H. Weissensteiner, Aaron M. Wenger, Melissa A. Wilson, Samantha Zarate, Yiming Zhu, Justin M. Zook, Evan E. Eichler, Rachel J. O’Neill, Michael C. Schatz, Karen H. Miga, Kateryna D. Makova, Adam M. Phillippy, 2023, Nature
Dynamic evolution of great ape Y chromosomes
Monika Cechova, Rahulsimham Vegesna, Marta Tomaszkiewicz, Robert S. Harris, Di Chen, Samarth Rangavittal, Paul Medvedev, Kateryna D. Makova, 2020, Proceedings of the National Academy of Sciences of the United States of America on p. 26273-26280
Ampliconic genes on the great ape y chromosomes: Rapid evolution of copy number but conservation of expression levels
Rahulsimham Vegesna, Marta Tomaszkiewicz, Oliver A. Ryder, Rebeca Campos-Sanchez, Rebeca Campos-Sanchez, Paul Medvedev, Michael DeGiorgio, Paul Medvedev, Michael DeGiorgio, K Makova, Kateryna D. Makova, 2020, Genome Biology and Evolution on p. 842-859
High Satellite Repeat Turnover in Great Apes Studied with Short- And Long-Read Technologies
Monika Cechova, Robert S. Harris, Marta Tomaszkiewicz, Barbara Arbeithuber, Francesca Chiaromonte, Kateryna D. Makova, 2019, Molecular Biology and Evolution on p. 2415-2431
Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes
Rahulsimham Vegesna, Marta Tomaszkiewicz, Paul Medvedev, Kateryna D. Makova, 2019, PLoS Genetics on p. e1008369
DiscoverY: A classifier for identifying y chromosome sequences in male assemblies
Samarth Rangavittal, Natasha Stopa, Marta Tomaszkiewicz, Kristoffer Sahlin, Kateryna D. Makova, Paul Medvedev, 2019, BMC Genomics on p. 641
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon
Kristoffer Sahlin, Marta Tomaszkiewicz, Kateryna D. Makova, Paul Medvedev, 2018, Nature Communications
High levels of copy number variation of ampliconic genes across major human Y haplogroups
Danling Ye, Arslan A. Zaidi, Marta Tomaszkiewicz, Kate Anthony, Corey Liebowitz, Michael DeGiorgio, Mark D. Shriver, Kateryna D. Makova, 2018, Genome Biology and Evolution on p. 1333-1350
RecoverY: K-mer-based read classification for Y-chromosome-specific sequencing and assembly
Samarth Rangavittal, Robert S. Harris, Monika Cechova, Marta Tomaszkiewicz, Rayan Chikhi, Kateryna D. Makova, Paul Medvedev, 2018, Bioinformatics on p. 1125-1131
Most-Cited Papers
A time- and cost-effective strategy to sequence mammalian Y chromosomes: An application to the de novo assembly of gorilla Y
Marta Tomaszkiewicz, Samarth Rangavittal, Monika Cechova, Rebeca Campos Sanchez, Howard W. Fescemyer, Robert Harris, Danling Ye, Patricia C.M. O'Brien, Rayan Chikhi, Oliver A. Ryder, Malcolm A. Ferguson-Smith, Paul Medvedev, Kateryna D. Makova, 2016, Genome Research on p. 530-540
Y and W Chromosome Assemblies: Approaches and Discoveries
Marta Tomaszkiewicz, Paul Medvedev, Kateryna D. Makova, 2017, Trends in Genetics on p. 266-282
Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon
Kristoffer Sahlin, Marta Tomaszkiewicz, Kateryna D. Makova, Paul Medvedev, 2018, Nature Communications
High Satellite Repeat Turnover in Great Apes Studied with Short- And Long-Read Technologies
Monika Cechova, Robert S. Harris, Marta Tomaszkiewicz, Barbara Arbeithuber, Francesca Chiaromonte, Kateryna D. Makova, 2019, Molecular Biology and Evolution on p. 2415-2431
Dynamic evolution of great ape Y chromosomes
Monika Cechova, Rahulsimham Vegesna, Marta Tomaszkiewicz, Robert S. Harris, Di Chen, Samarth Rangavittal, Paul Medvedev, Kateryna D. Makova, 2020, Proceedings of the National Academy of Sciences of the United States of America on p. 26273-26280
RecoverY: K-mer-based read classification for Y-chromosome-specific sequencing and assembly
Samarth Rangavittal, Robert S. Harris, Monika Cechova, Marta Tomaszkiewicz, Rayan Chikhi, Kateryna D. Makova, Paul Medvedev, 2018, Bioinformatics on p. 1125-1131
Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes
Rahulsimham Vegesna, Marta Tomaszkiewicz, Paul Medvedev, Kateryna D. Makova, 2019, PLoS Genetics on p. e1008369
High levels of copy number variation of ampliconic genes across major human Y haplogroups
Danling Ye, Arslan A. Zaidi, Marta Tomaszkiewicz, Kate Anthony, Corey Liebowitz, Michael DeGiorgio, Mark D. Shriver, Kateryna D. Makova, 2018, Genome Biology and Evolution on p. 1333-1350
Reverse Transcription Errors and RNA-DNA Differences at Short Tandem Repeats
Arkarachai Fungtammasan, Marta Tomaszkiewicz, Rebeca Campos-Sánchez, Kristin A. Eckert, Michael Degiorgio, Kateryna D. Makova, 2016, Molecular Biology and Evolution on p. 2744-2758
A multicopy Y-chromosomal SGNH hydrolase gene expressed in the testis of the platyfish has been captured and mobilized by a Helitron transposon
Marta Tomaszkiewicz, Domitille Chalopin, Manfred Schartl, Delphine Galiana, Jean Nicolas Volff, 2014, BMC Genetics