Marta Tomaszkiewicz

Assistant Research Professor

Marta Tomaszkiewicz

Huck Affiliations

Publication Tags

Genes Y Chromosome Genome Chromosomes Chromosome Gene Dosage Gene Expression Hominidae Vertebrates Pan Troglodytes Gene Recovery Proteins Pongidae Haploidy Terminal Repeat Sequences Dna Haplotypes Rna Family Pan Paniscus Chromosomes, Human, Y Dosage Sex Chromosomes Testis

Most Recent Papers

Targeted sequencing of ampliconic gene transcripts from total human male testis RNA.

Marta Tomaszkiewicz, K Makova,

Dynamic evolution of great ape Y chromosomes

Monika Cechova, Rahulsimham Vegesna, Marta Hoover, Robert S. Harris, Di Chen, Samarth Rangavittal, Paul Medvedev, Kateryna Dmytrivna Makova, 2020, Proceedings of the National Academy of Sciences of the United States of America on p. 26273-26280

Ampliconic genes on the great spe Y chromosomes: rapid evolution of copy number but conservation of expression levels

Rahulsimham Vegesna, Marta Tomaszkiewicz, Oliver A. Ryder, Rebeca Campos-Sánchez, Paul Medvedev, Michael DeGiorgio, Kateryna D. Makova, 2020, Genome Biology and Evolution on p. 842-859

High satellite repeat turnover in great apes studied with short- and long-read technologies.

Monika Cechova, Robert S. Harris, Marta Tomaszkiewicz, Barbara Arbeithuber, Francesca Chiaromonte, Kateryna D. Makova, 2019, Molecular Biology and Evolution on p. 2415-2431

Dosage regulation, and variation in gene expression and copy number of human Y chromosome ampliconic genes.

R Vegesna, Marta Tomaszkiewicz, Paul Medvedev, Kateryna Makova, 2019, PLoS Genetics on p. e1008369

DiscoverY

Samarth Rangavittal, Natasha Stopa, Marta Tomaszkiewicz, Kristoffer Sahlin, Kateryna D. Makova, Paul Medvedev, 2019, BMC Genomics on p. 641

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon

Kristoffer Sahlin, Marta Hoover, Kateryna Dmytrivna Makova, Paul Medvedev, 2018, Nature Communications

High levels of copy number variation of ampliconic genes across major human Y haplogroups

Danling Ye, Arslan A. Zaidi, Marta Hoover, Kate Anthony, Corey R. Liebowitz, Michael DeGiorgio, Mark Shriver, Kateryna Dmytrivna Makova, 2018, Genome Biology and Evolution on p. 1333-1350

RecoverY: K-mer-based read classification for Y-chromosome-specific sequencing and assembly

Samarth Rangavittal, Robert S. Harris, Monika Cechova, Marta Tomaszkiewicz, Rayan Chikhi, Kateryna D. Makova, Paul Medvedev, 2018, Bioinformatics on p. 1125-1131

Y and W Chromosome Assemblies

Marta Tomaszkiewicz, Paul Medvedev, Kateryna D. Makova, 2017, Trends in Genetics on p. 266-282

Most-Cited Papers

A time- and cost-effective strategy to sequence mammalian Y chromosomes: An application to the de novo assembly of gorilla Y

Marta Tomaszkiewicz, Samarth Rangavittal, Monika Cechova, Rebeca Campos Sanchez, Howard W. Fescemyer, Robert Harris, Danling Ye, Patricia C.M. O'Brien, Rayan Chikhi, Oliver A. Ryder, Malcolm A. Ferguson-Smith, Paul Medvedev, Kateryna D. Makova, 2016, Genome Research on p. 530-540

Y and W Chromosome Assemblies

Marta Tomaszkiewicz, Paul Medvedev, Kateryna D. Makova, 2017, Trends in Genetics on p. 266-282

Deciphering highly similar multigene family transcripts from Iso-Seq data with IsoCon

Kristoffer Sahlin, Marta Hoover, Kateryna Dmytrivna Makova, Paul Medvedev, 2018, Nature Communications

RecoverY: K-mer-based read classification for Y-chromosome-specific sequencing and assembly

Samarth Rangavittal, Robert S. Harris, Monika Cechova, Marta Tomaszkiewicz, Rayan Chikhi, Kateryna D. Makova, Paul Medvedev, 2018, Bioinformatics on p. 1125-1131

High satellite repeat turnover in great apes studied with short- and long-read technologies.

Monika Cechova, Robert S. Harris, Marta Tomaszkiewicz, Barbara Arbeithuber, Francesca Chiaromonte, Kateryna D. Makova, 2019, Molecular Biology and Evolution on p. 2415-2431

A multicopy Y-chromosomal SGNH hydrolase gene expressed in the testis of the platyfish has been captured and mobilized by a Helitron transposon

Marta Tomaszkiewicz, Domitille Chalopin, Manfred Schartl, Delphine Galiana, Jean Nicolas Volff, 2014, BMC Genetics

Reverse transcription errors and RNA-DNA differences at short tandem repeats

Arkarachai Fungtammasan, Marta Hoover, Rebeca Campos-Sánchez, Kristin Eckert, Michael DeGiorgio, Kateryna Dmytrivna Makova, 2016, Molecular Biology and Evolution on p. 2744-2758

High levels of copy number variation of ampliconic genes across major human Y haplogroups

Danling Ye, Arslan A. Zaidi, Marta Hoover, Kate Anthony, Corey R. Liebowitz, Michael DeGiorgio, Mark Shriver, Kateryna Dmytrivna Makova, 2018, Genome Biology and Evolution on p. 1333-1350

LTR retroelement-derived protein-coding genes and vertebrate evolution

Domitille Chalopin, Marta Tomaszkiewicz, Delphine Galiana, Jean Nicolas Volff, 2012, on p. 269-282

Dynamic evolution of great ape Y chromosomes

Monika Cechova, Rahulsimham Vegesna, Marta Hoover, Robert S. Harris, Di Chen, Samarth Rangavittal, Paul Medvedev, Kateryna Dmytrivna Makova, 2020, Proceedings of the National Academy of Sciences of the United States of America on p. 26273-26280