John Carlson
Professor of Molecular Genetics; Director, Schatz Center for Tree Molecular Genetics
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323 Forest Resources Building
University Park, PA - jec16@psu.edu
- 814-863-9164
Research Summary
Genome mapping, including genetic linkage mapping, molecular cytogenetics; studies of genetic diversity in forests.
Huck Affiliations
- Bioinformatics and Genomics
- Molecular, Cellular, and Integrative Biosciences
- Microbiome Center
- Plant Institute
- Center for Biorenewables
- Center for Chemical Ecology
Links
Publication Tags
Genes Genomics Genome Lignocellulose Lignin Phylogeny Breeding Ecology Proteins Fagaceae Beetles Quercus Coleoptera Nutrients Enzymes Resource Biodiversity Proteomics Insects Transcriptome Castanea Cultivars Gene Expression Profiling Genetic Markers PeroxidasesMost Recent Papers
Use of genomic resources to assess adaptive divergence and introgression in oaks
Desanka Lazic, Andrew L. Hipp, John E. Carlson, Oliver Gailing, 2021, Forests
A high-quality reference genome for Fraxinus pennsylvanica for ash species restoration and research
Matt Huff, Josiah Seaman, Wu Di, Tetyana Zhebentyayeva, Laura J. Kelly, Nurul Faridi, Charles D. Nelson, Endymion Cooper, Teodora Best, Kim Steiner, Jennifer Koch, Jeanne Romero Severson, John E. Carlson, Richard Buggs, Margaret Staton, 2021, Molecular Ecology Notes
Oak population genomics
Oliver Gailing, Andrew Hipp, Christophe Plomion, John Carlson, 2021,
Corrigendum to Phylogenetic analysis based on chloroplast genome uncover evolutionary relationship of all the nine species and six cultivars of tree peony [Industrial Crops and Products 153 October (2020) 112567] (Industrial Crops & Products (2020) 153, (S0926669020304830), (10.1016/j.indcrop.2020.112567))
Lili Guo, Shuai Guo, Jiang Xu, Lixia He, John E. Carlson, Xiaogai Hou, 2020, Industrial Crops and Products
Phylogenetic analysis based on chloroplast genome uncover evolutionary relationship of all the nine species and six cultivars of tree peony
Lili Guo, Shuai Guo, Jiang Xu, Lixia He, John E. Carlson, Xiaogai Hou, 2020, Industrial Crops and Products
Inter-specific hybridization of Alnus rubra and Alnus rhombifolia
Brian J. Stanton, Teodora Best, Nurul Islam-Faridi, Carlos Gantz, Kathy Haiby, Lianna J. Johnson, Rich Shuren, Alex Stanish, Margaret Staton, T. Casey Weathers, Di Wu, John E. Carlson, 2020, Tree Genetics and Genomes
“A reference genome assembly and adaptive trait analysis of Castanea mollissima ‘Vanuxem,’ a source of resistance to chestnut blight in restoration breeding”
Margaret Staton, Charles Addo-Quaye, Nathaniel Cannon, Jiali Yu, Tetyana Zhebentyayeva, Matthew Huff, Nurul Islam-Faridi, Shenghua Fan, Laura L. Georgi, C. Dana Nelson, Emily Bellis, Sara Fitzsimmons, Nathan Henry, Daniela Drautz-Moses, Rooksana E. Noorai, Stephen Ficklin, Christopher Saski, Mihir Mandal, Tyler K. Wagner, Nicole Zembower, Catherine Bodénès, Jason Holliday, Jared Westbrook, Jesse Lasky, Frederick V. Hebard, Stephan C. Schuster, Albert G. Abbott, John E. Carlson, 2020, Tree Genetics and Genomes
Transcriptome analysis of contrasting resistance to herbivory by Empoasca fabae in two shrub willow species and their hybrid progeny
Wanyan Wang, Craig H. Carlson, Lawrence B. Smart, John E. Carlson, 2020, PLoS One
Transcriptome profiles of Quercus rubra responding to increased O<sub>3</sub> stress
Nourolah Soltani, Teo Best, Dantria Grace, Christen Nelms, Ketia Shumaker, Jeanne Romero-Severson, Daniela Moses, Stephan Schuster, Margaret Staton, John Carlson, Kimberly Gwinn, 2020, BMC Genomics
An Improved Chinese Chestnut Genome
John Carlson, Margaret Staton, Charles Addo-Quaye, Nathaniel Cannon, T Zhebentyayeva, Nurul Islam-Faridi, Jiali Yu, Matthew Huff, Shenghua Fan, Anna Conrad, others, 2020, on p. 118--124
Most-Cited Papers
Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle
Erin D. Scully, Scott M. Geib, Kelli Hoover, Ming Tien, Susannah G. Tringe, Kerrie W. Barry, Tijana Glavina del Rio, Mansi Chovatia, Joshua R. Herr, John E. Carlson, 2013, PLoS One on p. e73827
Genomics of Fagaceae
Antoine Kremer, Albert G. Abbott, John E. Carlson, Paul S. Manos, Christophe Plomion, Paul Sisco, Margaret E. Staton, Saneyoshi Ueno, Giovanni G. Vendramin, 2012, Tree Genetics and Genomes on p. 583-610
Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles
Erin D. Scully, Scott M. Geib, John E. Carlson, Ming Tien, Duane McKenna, Kelli Hoover, 2014, BMC Genomics
Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: Mechanisms of the biotrophic and necrotrophic phases
Lyndel W. Meinhardt, Gustavo Gilson L. Costa, Daniela P.T. Thomazella, Paulo José P.L. Teixeira, Marcelo F. Carazzolle, Stephan C. Schuster, John E. Carlson, Mark J. Guiltinan, Piotr Mieczkowski, Andrew Farmer, Thiruvarangan Ramaraj, Jayne Crozier, Robert E. Davis, Jonathan Shao, Rachel L. Melnick, Gonçalo A.G. Pereira, Bryan A. Bailey, 2014, BMC Genomics
Chestnut resistance to the blight disease
Abdelali Barakat, Meg Staton, Chun Huai Cheng, Joseph Park, Norzawani B.M. Yassin, Stephen Ficklin, Chia Chun Yeh, Fred Hebard, Kathleen Baier, William Powell, Stephan C. Schuster, Nicholas Wheeler, Albert Abbott, John E. Carlson, Ronald Sederoff, 2012, BMC Plant Biology
Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle
Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib, 2013, BMC Genomics
Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar.
Chuan Yu Hsu, Joshua P. Adams, Kyoungok No, Haiying Liang, Richard Meilan, Olga Pechanova, Abdelali Barakat, John E. Carlson, Grier P. Page, Cetin Yuceer, 2012, PLoS One on p. e45448
Cold stress causes rapid but differential changes in properties of plasma membrane H<sup>+</sup>-ATPase of camelina and rapeseed
Hyun Sung Kim, Jung Min Oh, Sheng Luan, John E. Carlson, Sung Ju Ahn, 2013, Z. PFLANZENPHYSIOL. on p. 828-837
Proteomic analysis of fusarium solani isolated from the asian longhorned beetle, anoplophora glabripennis
Erin D. Scully, Kelli Hoover, John Carlson, Ming Tien, Scott M. Geib, 2012, PLoS One
Fagaceae trees as models to integrate ecology, evolution and genomics
Rémy J. Petit, John Carlson, Alexandru L. Curtu, Marie Laure Loustau, Christophe Plomion, Antonio González-Rodríguez, Victoria Sork, Alexis Ducousso, 2013, New Phytologist on p. 369-371
News Articles Featuring John Carlson
Jul 03, 2019
Some green ash trees show some resistance to emerald ash borers
Genes in green ash trees that may confer some resistance to attacks by the emerald ash borer express themselves only once the tree detects the invasive beetle's feeding, according to Penn State researchers.
Full Article