John Carlson

Professor of Molecular Genetics; Director, Schatz Center for Tree Molecular Genetics

John Carlson

Research Summary

Genome mapping, including genetic linkage mapping, molecular cytogenetics; studies of genetic diversity in forests.

Huck Affiliations


Publication Tags

Genes Proteins Microsatellite Repeats Genomics Gene Flow Genome Economics Transcriptome Water Populus Aquaporin 1 Genetic Variation Pollen Cinnamoyl Coa Reductase Agriculture Isolated Population Beetles Gleditsia Triacanthos Cacao Temperature Regulon Arabidopsis Necrosis Phylogeny Growth

Most Recent Papers

Factoring Ecological, Societal, and Economic Considerations into Inoculant Development

Terrence H Bell, Laura M Kaminsky, Beth K Gugino, John E Carlson, Rondy J Malik, Kevin L Hockett, Ryan V Trexler, 2019, Trends in Biotechnology on p. 572-573

NaCl-induced CsRCI2E and CsRCI2F interact with aquaporin CsPIP2;1 to reduce water transport in Camelina sativa L.

Hyun Sung Kim, Won Park, Hyun Gyu Lim, Sanung Eom, Jun Ho Lee, John Edward Carlson, Sung Ju Ahn, 2019, Biochemical and Biophysical Research Communications on p. 213-218

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Terrence H Bell, Kevin Hockett, Ricardo Ivan Alcalá-Briseño, Mary Barbercheck, Gwyn A Beattie, Mary Ann Bruns, John Carlson, Taejung Chung, Alyssa Collins, Bryan Emmett, Paul Esker, karen Garrett, Leland Glenna, Beth K. Gugino, Maria del Mar Jimenez Gasco, Linda Kinkel, Jasna Kovac, Kurt Kowalski, Gretchen Kuldau, Johan Leveau, Matthew Michalska-Smith, Jessica Myrick, Kari Peter, Maria Vivanco Salazar, Ashley Shade, Nejc Stopnisek, Xiaoqing Tan, Amy Welty, Kyle Wickings, Etienne Yergeau, 2019, Phytobiomes Journal

Neutral Genetic and Phenotypic Variation within and among Isolated Headwater Populations of Brook Trout

T. Casey Weathers, David C. Kazyak, Jay Richard Stauffer, Jr., Matt A. Kulp, Stephen E. Moore, Tim L. King, John Edward Carlson, 2019, Transactions of the American Fisheries Society on p. 58-72

Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.)

Monica Harmon, Thomas Lane, Margaret Staton, Mark V. Coggeshall, Teodora Best, Chien Chih Chen, Haiying Liang, Nicole Zembower, Daniela I. Drautz-Moses, Yap Zhei Hwee, Stephan C. Schuster, Scott E. Schlarbaum, John Edward Carlson, Oliver Gailing, 2017, BMC Research Notes

Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

Irina Čalić, Jennifer Koch, David Carey, Charles Addo-Quaye, John Edward Carlson, David B. Neale, 2017, BMC genomics

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

Arpita Konar, Olivia Choudhury, Rebecca Bullis, Lauren Fiedler, Jacqueline M. Kruser, Melissa T. Stephens, Oliver Gailing, Scott Schlarbaum, Mark V. Coggeshall, Margaret E. Staton, John E. Carlson, Scott Emrich, Jeanne Romero-Severson, 2017, BMC genomics

Development of genic and genomic microsatellites in Gleditsia triacanthos L. (Fabaceae) using illumina sequencing

Yawen Wu, Ruhua Zhang, Margaret Staton, Scott E. Schlarbaum, Mark V. Coggeshall, Jeanne Romero-Severson, John E. Carlson, Nicole Zembower, Haiying Liang, Yi Xu, Daniela I. Drautz-Moses, Stephan C. Schuster, Oliver Gailing, 2017, Annals of Forest Research on p. 343-350

The green ash transcriptome and identification of genes responding to abiotic and biotic stresses

Thomas Lane, Teodora Best, Nicole Zembower, Jack Davitt, Nathan Henry, Yi Xu, Jennifer Koch, Haiying Liang, John McGraw, Stephan Schuster, Donghwan Shim, Mark V. Coggeshall, John Edward Carlson, Margaret E. Staton, 2016, BMC genomics

Pollen gene flow and molecular identification of full-sib families in small and isolated population fragments of Gleditsia triacanthos L

Sandra A. Owusu, Scott E. Schlarbaum, John Edward Carlson, Oliver Gailing, 2016, Botany on p. 523-532

Most-Cited Papers

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

Chuan Yu Hsu, Joshua P. Adams, Hyejin Kim, Kyoungok No, Caiping Ma, Steven H. Strauss, Jenny Drnevich, Lindsay Vandervelde, Jeffrey D. Ellis, Brandon M. Rice, Norman Wickett, Lee E. Gunter, Gerald A. Tuskan, Amy M. Brunner, Grier P. Page, Abdelali Barakat, John E. Carlson, Claude W. DePamphilis, Dawn S. Luthe, Cetin Yuceer, 2011, Proceedings of the National Academy of Sciences of the United States of America on p. 10756-10761

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao

Lyndel W. Meinhardt, Gustavo Gilson L. Costa, Daniela P.T. Thomazella, Paulo José P.L. Teixeira, Marcelo F. Carazzolle, Stephan C. Schuster, John E. Carlson, Mark J. Guiltinan, Piotr Mieczkowski, Andrew Farmer, Thiruvarangan Ramaraj, Jayne Crozier, Robert E. Davis, Jonathan Shao, Rachel L. Melnick, Gonçalo A.G. Pereira, Bryan A. Bailey, 2014, BMC genomics

Chestnut resistance to the blight disease

Abdelali Barakat, Meg Staton, Chun Huai Cheng, Joseph Park, Norzawani B.M. Yassin, Stephen Ficklin, Chia Chun Yeh, Fred Hebard, Kathleen Baier, William Powell, Stephan C. Schuster, Nicholas Wheeler, Albert Abbott, John Edward Carlson, Ronald Sederoff, 2012, BMC plant biology

Phylogeny and expression profiling of CAD and CAD-like genes in hybrid Populus (P. deltoides × P. nigra)

Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Christopher J. Frost, John Edward Carlson, 2010, BMC Plant Biology

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle

Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib, 2013, BMC genomics

Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles

Erin D. Scully, Scott M. Geib, John E. Carlson, Ming Tien, Duane McKenna, Kelli Hoover, 2014, BMC genomics

Overexpression of Constans Homologs CO1 and CO2 Fails to Alter Normal Reproductive Onset and Fall Bud Set in Woody Perennial Poplar

Chuan Yu Hsu, Joshua P. Adams, Kyoungok No, Haiying Liang, Richard Meilan, Olga Pechanova, Abdelali Barakat, John E. Carlson, Grier P. Page, Cetin Yuceer, 2012, PloS one

Cold stress causes rapid but differential changes in properties of plasma membrane H<sup>+</sup>-ATPase of camelina and rapeseed

Hyun Sung Kim, Jung Min Oh, Sheng Luan, John Edward Carlson, Sung Ju Ahn, 2013, Journal of Plant Physiology on p. 828-837

Genes acquired by horizontal transfer are potentially involved in the evolution of phytopathogenicity in moniliophthora perniciosa and moniliophthora roreri, two of the major pathogens of cacao

Ricardo Augusto Tiburcio, Gustavo Gilson Lacerda Costa, Marcelo Falsarella Carazzolle, Jorge Mauŕcio Costa Mondego, Stephen C. Schuster, John Edward Carlson, Mark Guiltinan, Bryan A. Bailey, Piotr Mieczkowski, Lyndel W. Meinhardt, Gonçalo Amarante Guimarães Pereira, 2010, Journal of Molecular Evolution on p. 85-97

Comparative and phylogenomic analyses of cinnamoyl-CoA reductase and cinnamoyl-CoA-reductase-like gene family in land plants

Abdelali Barakat, Norzawani Buang M. Yassin, Joseph S. Park, Alex Choi, Josh Herr, John Edward Carlson, 2011, Plant Science on p. 249-257