John Carlson

Professor of Molecular Genetics; Director, Schatz Center for Tree Molecular Genetics

John Carlson

Research Summary

Genome mapping, including genetic linkage mapping, molecular cytogenetics; studies of genetic diversity in forests.

Huck Institutes Affiliations


Publication Tags

Genes Genome Single Nucleotide Polymorphism Proteins Microsatellite Repeats Transcriptome Populus Economics Lignocellulose Anoplophora Glabripennis Lignin Water Digestive System Microbial Communities Chromosome Mapping Technology Genetic Linkage Cacao Cinnamyl Alcohol Dehydrogenase Agriculture Aquaporin 1 Pinus Phylogeny Gene Expression Retroelements

Most Recent Papers

Factoring Ecological, Societal, and Economic Considerations into Inoculant Development

Terrence H Bell, Laura M Kaminsky, Beth K Gugino, John E Carlson, Rondy J Malik, Kevin L Hockett, Ryan V Trexler, 2019, Trends in Biotechnology on p. 572-573

NaCl-induced CsRCI2E and CsRCI2F interact with aquaporin CsPIP2;1 to reduce water transport in Camelina sativa L.

Hyun Sung Kim, Won Park, Hyun Gyu Lim, Sanung Eom, Jun Ho Lee, John Edward Carlson, Sung Ju Ahn, 2019, Biochemical and Biophysical Research Communications on p. 213-218

Manipulating Wild and Tamed Phytobiomes: Challenges and Opportunities

Terrence H Bell, Kevin Hockett, Ricardo Ivan Alcalá-Briseño, Mary Barbercheck, Gwyn A Beattie, Mary Ann Bruns, John Carlson, Taejung Chung, Alyssa Collins, Bryan Emmett, Paul Esker, karen Garrett, Leland Glenna, Beth K. Gugino, Maria del Mar Jimenez Gasco, Linda Kinkel, Jasna Kovac, Kurt Kowalski, Gretchen Kuldau, Johan Leveau, Matthew Michalska-Smith, Jessica Myrick, Kari Peter, Maria Vivanco Salazar, Ashley Shade, Nejc Stopnisek, Xiaoqing Tan, Amy Welty, Kyle Wickings, Etienne Yergeau, 2019, Phytobiomes Journal

The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species

Di Wu, Jennifer Koch, Mark Coggeshall, John Edward Carlson, 2019, Plant molecular biology on p. 251-264

Neutral Genetic and Phenotypic Variation within and among Isolated Headwater Populations of Brook Trout

T. Casey Weathers, David C. Kazyak, Jay Richard Stauffer, Jr., Matt A. Kulp, Stephen E. Moore, Tim L. King, John Edward Carlson, 2019, Transactions of the American Fisheries Society on p. 58-72

Host-plant induced changes in microbial community structure and midgut gene expression in an invasive polyphage (Anoplophora glabripennis

Erin D. Scully, Scott M. Geib, Charles J. Mason, John Edward Carlson, Ming Tien, Han Yi Chen, Scott Harding, Chung Jui Tsai, Kelli Hoover, 2018, Scientific reports

Development of novel genic microsatellite markers from transcriptome sequencing in sugar maple (Acer saccharum Marsh.)

Monica Harmon, Thomas Lane, Margaret Staton, Mark V. Coggeshall, Teodora Best, Chien Chih Chen, Haiying Liang, Nicole Zembower, Daniela I. Drautz-Moses, Yap Zhei Hwee, Stephan C. Schuster, Scott E. Schlarbaum, John Edward Carlson, Oliver Gailing, 2017, BMC Research Notes

Genome-wide association study identifies a major gene for beech bark disease resistance in American beech (Fagus grandifolia Ehrh.)

Irina Čalić, Jennifer Koch, David Carey, Charles Addo-Quaye, John Edward Carlson, David B. Neale, 2017, BMC genomics

High-quality genetic mapping with ddRADseq in the non-model tree Quercus rubra

Arpita Konar, Olivia Choudhury, Rebecca Bullis, Lauren Fiedler, Jacqueline M. Kruser, Melissa T. Stephens, Oliver Gailing, Scott Schlarbaum, Mark V. Coggeshall, Margaret E. Staton, John Edward Carlson, Scott Emrich, Jeanne Romero-Severson, 2017, BMC genomics

Construction of a Framework Genetic Linkage Map in Gleditsia triacanthos L

Oliver Gailing, Margaret E. Staton, Thomas Lane, Scott E. Schlarbaum, Rick Nipper, Sandra A. Owusu, John Edward Carlson, 2017, Plant Molecular Biology Reporter on p. 177-187

High-Impact Papers

The genome of Theobroma cacao

Xavier Argout, Jerome Salse, Jean Marc Aury, Mark Guiltinan, Gaetan Droc, Jerome Gouzy, Mathilde Allegre, Cristian Chaparro, Thierry Legavre, Siela Maximova, Michael Abrouk, Florent Murat, Olivier Fouet, Julie Poulain, Manuel Ruiz, Yolande Roguet, Maguy Rodier-Goud, Jose Fernandes Barbosa-Neto, Francois Sabot, Dave Kudrna, Jetty Siva S. Ammiraju, Stephan C. Schuster, John Edward Carlson, Erika Sallet, Thomas Schiex, Anne Dievart, Melissa Kramer, Laura Gelley, Zi Shi, Aurélie Bérard, Christopher Viot, Michel Boccara, Ange Marie Risterucci, Valentin Guignon, Xavier Sabau, Michael Axtell, Zhaorong Ma, Yufan Zhang, Spencer Brown, Mickael Bourge, Wolfgang Golser, Xiang Song, Didier Clement, Ronan Rivallan, Mathias Tahi, Joseph Moroh Akaza, Bertrand Pitollat, Karina Gramacho, Anglique D'Hont, Dominique Brunel, Diogenes Infante, Ismael Kebe, Pierre Costet, Rod Wing, W. Richard McCombie, Emmanuel Guiderdoni, Francis Quetier, Olivier Panaud, Patrick Wincker, Stephanie Bocs, Claire Lanaud, 2011, Nature Genetics on p. 101-108

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

Chuan Yu Hsu, Joshua P. Adams, Hyejin Kim, Kyoungok No, Caiping Ma, Steven H. Strauss, Jenny Drnevich, Lindsay Vandervelde, Jeffrey D. Ellis, Brandon M. Rice, Norman Wickett, Lee E. Gunter, Gerald A. Tuskan, Amy M. Brunner, Grier P. Page, Abdelali Barakat, John Edward Carlson, Claude Walker Depamphilis, Dawn S. Luthe, Cetin Yuceer, 2011, Proceedings of the National Academy of Sciences of the United States of America on p. 10756-10761

Comparison of next generation sequencing technologies for transcriptome characterization

P. Kerr Wall, Jim Leebens-Mack, André S. Chanderbali, Abdelali Barakat, Erik Wolcott, Haiying Liang, Lena Landherr Sheaffer, Lynn P. Tomsho, Yi Hu, John Edward Carlson, Hong Ma, Stephan C. Schuster, Douglas E. Soltis, Pamela S. Soltis, Naomi S. Altman, Claude Walker Depamphilis, 2009, BMC genomics

Evolution of genome size and complexity in Pinus

Alison M. Morse, Daniel G. Peterson, M. Nurul Islam-Faridi, Katherine E. Smith, Zenaida Magbanua, Saul A. Garcia, Thomas L. Kubisiak, Henry V. Amerson, John Edward Carlson, C. Dana Nelson, John M. Davis, 2009, PLoS One

The cinnamyl alcohol dehydrogenase gene family in Populus

Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Alex Choi, Urmila Plakkat, Denis S. Diloreto, Priyadarshini Yellanki, John Edward Carlson, 2009, BMC Plant Biology

Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle

Erin D. Scully, Scott M. Geib, Kelli Hoover, Ming Tien, Susannah G. Tringe, Kerrie W. Barry, Tijana Glavina del Rio, Mansi Chovatia, Joshua R. Herr, John Edward Carlson, 2013, PloS one

Effect of host tree species on cellulase activity and bacterial community composition in the gut of larval asian longhorned beetle

Scott M. Geib, Maria Del Mar Jimenez Gasco, John Edward Carlson, Ming Tien, Kelli Hoover, 2009, Environmental Entomology on p. 686-699

Populus euphratica

Sha Tang, Haiying Liang, Donghui Yan, Ying Zhao, Xiao Han, John Edward Carlson, Xinli Xia, Weilun Yin, 2013, Plant molecular biology on p. 539-557

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao

Lyndel W. Meinhardt, Gustavo Gilson L. Costa, Daniela P.T. Thomazella, Paulo José P.L. Teixeira, Marcelo F. Carazzolle, Stephan C. Schuster, John Edward Carlson, Mark Guiltinan, Piotr Mieczkowski, Andrew Farmer, Thiruvarangan Ramaraj, Jayne Crozier, Robert E. Davis, Jonathan Shao, Rachel L. Melnick, Gonçalo A.G. Pereira, Bryan A. Bailey, 2014, BMC genomics

Phylogeny and expression profiling of CAD and CAD-like genes in hybrid Populus (P. deltoides × P. nigra)

Abdelali Barakat, Agnieszka Bagniewska-Zadworna, Christopher J. Frost, John Edward Carlson, 2010, BMC Plant Biology