John Carlson

Professor of Molecular Genetics; Director, Schatz Center for Tree Molecular Genetics

John Carlson

Research Summary

Genome mapping, including genetic linkage mapping, molecular cytogenetics; studies of genetic diversity in forests.

Huck Affiliations


Publication Tags

Genes Genome Lignocellulose Breeding Proteins Water Beetles Coleoptera Transcriptomics Economics Transcriptome Lignin Populus Genetic Markers Gene Expression Profiling Enzymes Temperature Salix Nutrients Aquaporin 1 Agriculture Aquaporins Bioenergy Cacao Castanea

Most Recent Papers

Inter-specific hybridization of Alnus rubra and Alnus rhombifolia

Brian J. Stanton, Teodora Best, Nurul Islam-Faridi, Carlos Gantz, Kathy Haiby, Lianna J. Johnson, Rich Shuren, Alex Stanish, Margaret Staton, T. Casey Weathers, Di Wu, John E. Carlson, 2020, Tree Genetics and Genomes

Phylogenetic analysis based on chloroplast genome uncover evolutionary relationship of all the nine species and six cultivars of tree peony

Lili Guo, Shuai Guo, Jiang Xu, Lixia He, John E. Carlson, Xiaogai Hou, 2020, Industrial Crops and Products

“A reference genome assembly and adaptive trait analysis of Castanea mollissima ‘Vanuxem,’ a source of resistance to chestnut blight in restoration breeding”

Margaret Staton, Charles Addo-Quaye, Nathaniel Cannon, Jiali Yu, Tetyana Zhebentyayeva, Matthew Huff, Nurul Islam-Faridi, Shenghua Fan, Laura L. Georgi, C. Dana Nelson, Emily Bellis, Sara Fitzsimmons, Nathan Henry, Daniela Drautz-Moses, Rooksana E. Noorai, Stephen Ficklin, Christopher Saski, Mihir Mandal, Tyler K. Wagner, Nicole Zembower, Catherine Bodénès, Jason Holliday, Jared Westbrook, Jesse R. Lasky, Frederick V. Hebard, Stephan C. Schuster, Albert G. Abbott, John E. Carlson, 2020, Tree Genetics and Genomes

Transcriptome analysis of contrasting resistance to herbivory by Empoasca fabae in two shrub willow species and their hybrid progeny

Wanyan Wang, Craig H. Carlson, Lawrence B. Smart, John E. Carlson, 2020, PLoS One

Transcriptome profiles of Quercus rubra responding to increased O<sub>3</sub> stress

Nourolah Soltani, Teo Best, Dantria Grace, Christen Nelms, Ketia Shumaker, Jeanne Romero-Severson, Daniela Moses, Stephan Schuster, Margaret Staton, John Carlson, Kimberly Gwinn, 2020, BMC Genomics

Genetic diversity of Faidherbia albida populations in the Sudano Sahelian region of Cameroon, using simple sequence repeat (SSR) markers

T Tchatchoua, R Poethig, Erin Doody, T Weathers, Krystle Swartz, Iain Mathieson, Nicole Zembower, T Zhebentyayeva, John Carlson, 2020, African Journal of Biotechnology on p. 415--425

Factoring Ecological, Societal, and Economic Considerations into Inoculant Development

Terrence H Bell, Laura M Kaminsky, Beth K Gugino, John E Carlson, Rondy J Malik, Kevin L Hockett, Ryan V Trexler, 2019, Trends in Biotechnology on p. 572-573

NaCl-induced CsRCI2E and CsRCI2F interact with aquaporin CsPIP2;1 to reduce water transport in Camelina sativa L.

Hyun Sung Kim, Won Park, Hyun Gyu Lim, Sanung Eom, Jun Ho Lee, John Edward Carlson, Sung Ju Ahn, 2019, Biochemical and Biophysical Research Communications on p. 213-218

The first genetic linkage map for Fraxinus pennsylvanica and syntenic relationships with four related species

Di Wu, Jennifer Koch, Mark Coggeshall, John Edward Carlson, 2019, Plant Molecular Biology on p. 251-264

Neutral genetic and phenotypic variation within and among isolated headwater populations of brook trout

T. Casey Weathers, David C. Kazyak, Jay Richard Stauffer, Jr., Matt A. Kulp, Stephen E. Moore, Tim L. King, John Edward Carlson, 2019, Transactions of the American Fisheries Society on p. 58-72

Most-Cited Papers

The genome of Theobroma cacao

Xavier Argout, Jerome Salse, Jean Marc Aury, Mark Guiltinan, Gaetan Droc, Jerome Gouzy, Mathilde Allegre, Cristian Chaparro, Thierry Legavre, Siela Maximova, Michael Abrouk, Florent Murat, Olivier Fouet, Julie Poulain, Manuel Ruiz, Yolande Roguet, Maguy Rodier-Goud, Jose Fernandes Barbosa-Neto, Francois Sabot, Dave Kudrna, Jetty Siva S. Ammiraju, Stephan C. Schuster, John Edward Carlson, Erika Sallet, Thomas Schiex, Anne Dievart, Melissa Kramer, Laura Gelley, Zi Shi, Aurélie Bérard, Christopher Viot, Michel Boccara, Ange Marie Risterucci, Valentin Guignon, Xavier Sabau, Michael Axtell, Zhaorong Ma, Yufan Zhang, Spencer Brown, Mickael Bourge, Wolfgang Golser, Xiang Song, Didier Clement, Ronan Rivallan, Mathias Tahi, Joseph Moroh Akaza, Bertrand Pitollat, Karina Gramacho, Anglique D'Hont, Dominique Brunel, Diogenes Infante, Ismael Kebe, Pierre Costet, Rod Wing, W. Richard McCombie, Emmanuel Guiderdoni, Francis Quetier, Olivier Panaud, Patrick Wincker, Stephanie Bocs, Claire Lanaud, 2011, Nature Genetics on p. 101-108

FLOWERING LOCUS T duplication coordinates reproductive and vegetative growth in perennial poplar

Chuan Yu Hsu, Joshua P. Adams, Hyejin Kim, Kyoungok No, Caiping Ma, Steven H. Strauss, Jenny Drnevich, Lindsay Vandervelde, Jeffrey D. Ellis, Brandon M. Rice, Norman Wickett, Lee E. Gunter, Gerald A. Tuskan, Amy M. Brunner, Grier P. Page, Abdelali Barakat, John E. Carlson, Claude W. DePamphilis, Dawn S. Luthe, Cetin Yuceer, 2011, Proceedings of the National Academy of Sciences of the United States of America on p. 10756-10761

Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle

Erin D. Scully, Scott M. Geib, Kelli Hoover, Ming Tien, Susannah G. Tringe, Kerrie W. Barry, Tijana Glavina del Rio, Mansi Chovatia, Joshua R. Herr, John Edward Carlson, 2013, PLoS One on p. e73827

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: Mechanisms of the biotrophic and necrotrophic phases

Lyndel W. Meinhardt, Gustavo Gilson L. Costa, Daniela P.T. Thomazella, Paulo José P.L. Teixeira, Marcelo F. Carazzolle, Stephan C. Schuster, John E. Carlson, Mark J. Guiltinan, Piotr Mieczkowski, Andrew Farmer, Thiruvarangan Ramaraj, Jayne Crozier, Robert E. Davis, Jonathan Shao, Rachel L. Melnick, Gonçalo A.G. Pereira, Bryan A. Bailey, 2014, BMC Genomics

Populus euphratica

Sha Tang, Haiying Liang, Donghui Yan, Ying Zhao, Xiao Han, John Carlson, Xinli Xia, Weilun Yin, 2013, Plant Molecular Biology on p. 539-557

Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles

Erin D. Scully, Scott M. Geib, John E. Carlson, Ming Tien, Duane McKenna, Kelli Hoover, 2014, BMC Genomics

Chestnut resistance to the blight disease

Abdelali Barakat, Meg Staton, Chun Huai Cheng, Joseph Park, Norzawani B.M. Yassin, Stephen Ficklin, Chia Chun Yeh, Fred Hebard, Kathleen Baier, William Powell, Stephan C. Schuster, Nicholas Wheeler, Albert Abbott, John Edward Carlson, Ronald Sederoff, 2012, BMC Plant Biology

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle

Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib, 2013, BMC Genomics

Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar.

C Hsu, J Adams, K No, Huinan Liang, R Meilan, O Pechanova, Abdelali Barakat, John Carlson, G Page, C Yuceer, 2012, PLoS One on p. e45448

Cold stress causes rapid but differential changes in properties of plasma membrane H<sup>+</sup>-ATPase of camelina and rapeseed

Hyun Sung Kim, Jung Min Oh, Sheng Luan, John Edward Carlson, Sung Ju Ahn, 2013, Journal of Plant Physiology on p. 828-837