John Carlson

Professor of Molecular Genetics; Director, Schatz Center for Tree Molecular Genetics

John Carlson

Research Summary

Genome mapping, including genetic linkage mapping, molecular cytogenetics; studies of genetic diversity in forests.

Huck Affiliations

Links

Publication Tags

Genes Genomics Lignocellulose Genome Lignin Phylogeny Proteins Fagaceae Beetles Quercus Ecology Coleoptera Breeding Nutrients Enzymes Biodiversity Proteomics Resource Insects Transcriptome Castanea Cultivars Gene Expression Profiling Genetic Markers Peroxidases

Most Recent Papers

Use of genomic resources to assess adaptive divergence and introgression in oaks

Desanka Lazic, Andrew L. Hipp, John E. Carlson, Oliver Gailing, 2021, Forests

A high-quality reference genome for Fraxinus pennsylvanica for ash species restoration and research

Matt Huff, Josiah Seaman, Wu Di, Tetyana Zhebentyayeva, Laura J. Kelly, Nurul Faridi, Charles D. Nelson, Endymion Cooper, Teodora Best, Kim Steiner, Jennifer Koch, Jeanne Romero Severson, John E. Carlson, Richard Buggs, Margaret Staton, 2021, Molecular Ecology Notes

Corrigendum to Phylogenetic analysis based on chloroplast genome uncover evolutionary relationship of all the nine species and six cultivars of tree peony [Industrial Crops and Products 153 October (2020) 112567] (Industrial Crops & Products (2020) 153, (S0926669020304830), (10.1016/j.indcrop.2020.112567))

Lili Guo, Shuai Guo, Jiang Xu, Lixia He, John E. Carlson, Xiaogai Hou, 2020, Industrial Crops and Products

Inter-specific hybridization of Alnus rubra and Alnus rhombifolia

Brian J. Stanton, Teodora Best, Nurul Islam-Faridi, Carlos Gantz, Kathy Haiby, Lianna J. Johnson, Rich Shuren, Alex Stanish, Margaret Staton, T. Casey Weathers, Di Wu, John E. Carlson, 2020, Tree Genetics and Genomes

Phylogenetic analysis based on chloroplast genome uncover evolutionary relationship of all the nine species and six cultivars of tree peony

Lili Guo, Shuai Guo, Jiang Xu, Lixia He, John E. Carlson, Xiaogai Hou, 2020, Industrial Crops and Products

“A reference genome assembly and adaptive trait analysis of Castanea mollissima ‘Vanuxem,’ a source of resistance to chestnut blight in restoration breeding”

Margaret Staton, Charles Addo-Quaye, Nathaniel Cannon, Jiali Yu, Tetyana Zhebentyayeva, Matthew Huff, Nurul Islam-Faridi, Shenghua Fan, Laura L. Georgi, C. Dana Nelson, Emily Bellis, Sara Fitzsimmons, Nathan Henry, Daniela Drautz-Moses, Rooksana E. Noorai, Stephen Ficklin, Christopher Saski, Mihir Mandal, Tyler K. Wagner, Nicole Zembower, Catherine Bodénès, Jason Holliday, Jared Westbrook, Jesse Lasky, Frederick V. Hebard, Stephan C. Schuster, Albert G. Abbott, John E. Carlson, 2020, Tree Genetics and Genomes

Transcriptome analysis of contrasting resistance to herbivory by Empoasca fabae in two shrub willow species and their hybrid progeny

Wanyan Wang, Craig H. Carlson, Lawrence B. Smart, John E. Carlson, 2020, PLoS One

Transcriptome profiles of Quercus rubra responding to increased O<sub>3</sub> stress

Nourolah Soltani, Teo Best, Dantria Grace, Christen Nelms, Ketia Shumaker, Jeanne Romero-Severson, Daniela Moses, Stephan Schuster, Margaret Staton, John Carlson, Kimberly Gwinn, 2020, BMC Genomics

An Improved Chinese Chestnut Genome

John Carlson, Margaret Staton, Charles Addo-Quaye, Nathaniel Cannon, T Zhebentyayeva, Nurul Islam-Faridi, Jiali Yu, Matthew Huff, Shenghua Fan, Anna Conrad, others, 2020, on p. 118--124

Candidate genes from GWAS and RNAseq for Beech Bark Disease resistance in American Beech

John Carlson, Irina Ćalić, Jennifer Koch, David Carey, Charles Addo-Quaye, Donghwan Shim, David Neale, 2020, on p. 42--51

Most-Cited Papers

Metagenomic Profiling Reveals Lignocellulose Degrading System in a Microbial Community Associated with a Wood-Feeding Beetle

Erin D. Scully, Scott M. Geib, Kelli Hoover, Ming Tien, Susannah G. Tringe, Kerrie W. Barry, Tijana Glavina del Rio, Mansi Chovatia, Joshua R. Herr, John E. Carlson, 2013, PLoS One on p. e73827

Genomics of Fagaceae

Antoine Kremer, Albert G. Abbott, John E. Carlson, Paul S. Manos, Christophe Plomion, Paul Sisco, Margaret E. Staton, Saneyoshi Ueno, Giovanni G. Vendramin, 2012, Tree Genetics and Genomes on p. 583-610

Genome and secretome analysis of the hemibiotrophic fungal pathogen, Moniliophthora roreri, which causes frosty pod rot disease of cacao: Mechanisms of the biotrophic and necrotrophic phases

Lyndel W. Meinhardt, Gustavo Gilson L. Costa, Daniela P.T. Thomazella, Paulo José P.L. Teixeira, Marcelo F. Carazzolle, Stephan C. Schuster, John E. Carlson, Mark J. Guiltinan, Piotr Mieczkowski, Andrew Farmer, Thiruvarangan Ramaraj, Jayne Crozier, Robert E. Davis, Jonathan Shao, Rachel L. Melnick, Gonçalo A.G. Pereira, Bryan A. Bailey, 2014, BMC Genomics

Functional genomics and microbiome profiling of the Asian longhorned beetle (Anoplophora glabripennis) reveal insights into the digestive physiology and nutritional ecology of wood feeding beetles

Erin D. Scully, Scott M. Geib, John E. Carlson, Ming Tien, Duane McKenna, Kelli Hoover, 2014, BMC Genomics

Chestnut resistance to the blight disease

Abdelali Barakat, Meg Staton, Chun Huai Cheng, Joseph Park, Norzawani B.M. Yassin, Stephen Ficklin, Chia Chun Yeh, Fred Hebard, Kathleen Baier, William Powell, Stephan C. Schuster, Nicholas Wheeler, Albert Abbott, John E. Carlson, Ronald Sederoff, 2012, BMC Plant Biology

Midgut transcriptome profiling of Anoplophora glabripennis, a lignocellulose degrading cerambycid beetle

Erin D. Scully, Kelli Hoover, John E. Carlson, Ming Tien, Scott M. Geib, 2013, BMC Genomics

Overexpression of CONSTANS homologs CO1 and CO2 fails to alter normal reproductive onset and fall bud set in woody perennial poplar.

Chuan Yu Hsu, Joshua P. Adams, Kyoungok No, Haiying Liang, Richard Meilan, Olga Pechanova, Abdelali Barakat, John E. Carlson, Grier P. Page, Cetin Yuceer, 2012, PLoS One on p. e45448

Cold stress causes rapid but differential changes in properties of plasma membrane H<sup>+</sup>-ATPase of camelina and rapeseed

Hyun Sung Kim, Jung Min Oh, Sheng Luan, John E. Carlson, Sung Ju Ahn, 2013, Z. PFLANZENPHYSIOL. on p. 828-837

Proteomic analysis of fusarium solani isolated from the asian longhorned beetle, anoplophora glabripennis

Erin D. Scully, Kelli Hoover, John Carlson, Ming Tien, Scott M. Geib, 2012, PLoS One

Fagaceae trees as models to integrate ecology, evolution and genomics

Rémy J. Petit, John Carlson, Alexandru L. Curtu, Marie Laure Loustau, Christophe Plomion, Antonio González-Rodríguez, Victoria Sork, Alexis Ducousso, 2013, New Phytologist on p. 369-371