Stephen Schaeffer
Professor of Biology
-
507A Mueller
University Park, PA 16802 - He/Him
- sws4@psu.edu
Research Summary
Population Genetics and Genomics of Chromosomal Rearrangements in Drosophila
Huck Affiliations
Links
Publication Tags
These publication tags are generated from the output of this researcher. Click any tag below to view other Huck researchers working on the same topic.
Drosophila Genes Population Genomics Genome Chromosomes Gene Frequency Mutation Drosophila Pseudoobscura Genetic Recombination Population Genetics Drosophila Melanogaster Phylogeny Metagenomics Inversion Sampling Chromosome Inversion Gene Order Sex Ratio Hydrocarbons Gulf Of Mexico History Reproductive Isolation Pressure Linkage DisequilibriumMost Recent Publications
Evolution of Genome Organization
Stephen Schaeffer, Encyclopedia of Evolutionary Biology
How chromosomal inversions reorient the evolutionary process
Emma L. Berdan, Nicholas H. Barton, Roger Butlin, Brian Charlesworth, Rui Faria, Inês Fragata, Kimberly J. Gilbert, Paul Jay, Martin Kapun, Katie E. Lotterhos, Claire Mérot, Esra Durmaz Mitchell, Marta Pascual, Catherine L. Peichel, Marina Rafajlović, Anja M. Westram, Stephen W. Schaeffer, Kerstin Johannesson, Thomas Flatt, 2023, Journal of Evolutionary Biology
Timing of Bownes stage five embryos in Drosophila pseudoobscura.
Dynisty Wright, Stephen Schaeffer, 2022, Drosophila Information Service on p. 15-18
The relevance of chromatin architecture to genome rearrangements in Drosophila
Dynisty Wright, Stephen W. Schaeffer, 2022, Philosophical Transactions of the Royal Society B: Biological Sciences
Broad geographic sampling reveals predictable, pervasive, and strong seasonal adaptation in Drosophila
Heather Machado, Alan Bergland, Ryan Taylor, Susanne Tilk, Emily Behrman, Kelly Dyer, Daniel Fabian, Thomas Flatt, Josefa Gonzalez, Talia Karasov, Bernard Kim, Iryna Kozeretska, Brian Lazzaro, Thomas Merritt, John Pool, Katherine O'Brien, Subhash Pajpurohit, Paula Roy, Stephen Schaeffer, Svitlana Serga, Paul Schmidt, Dmitri Petrov, 2021, eLife on p. e67577
Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in drosophila
Heather E. Machado, Alan O. Bergland, Ryan Taylor, Susanne Tilk, Emily Behrman, Kelly Dyer, Daniel K. Fabian, Thomas Flatt, Josefa González, Talia L. Karasov, Bernard Kim, Iryna Kozeretska, Brian P. Lazzaro, Thomas J.S. Merritt, John E. Pool, Katherine O’brien, Subhash Rajpurohit, Paula R. Roy, Stephen W. Schaeffer, Svitlana Serga, Paul Schmidt, Dmitri A. Petrov, 2021, eLife
Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource
Martin Kapun, Joaquin C.B. Nunez, María Bogaerts-Márquez, Jesús Murga-Moreno, Margot Paris, Joseph Outten, Marta Coronado-Zamora, Courtney Tern, Omar Rota-Stabelli, Maria P. García Guerreiro, Sònia Casillas, Dorcas J. Orengo, Eva Puerma, Maaria Kankare, Lino Ometto, Volker Loeschcke, Banu S. Onder, Jessica K. Abbott, Stephen W. Schaeffer, Subhash Rajpurohit, Emily L. Behrman, Mads F. Schou, Thomas J.S. Merritt, Brian P. Lazzaro, Amanda Glaser-Schmitt, Eliza Argyridou, Fabian Staubach, Yun Wang, Eran Tauber, Svitlana V. Serga, Daniel K. Fabian, Kelly A. Dyer, Christopher W. Wheat, John Parsch, Sonja Grath, Marija Savic Veselinovic, Marina Stamenkovic-Radak, Mihailo Jelic, Antonio J. Buendía-Ruíz, Maria Josefa Gómez-Julián, Maria Luisa Espinosa-Jimenez, Francisco D. Gallardo-Jiménez, Aleksandra Patenkovic, Katarina Eric, Marija Tanaskovic, Anna Ullastres, Lain Guio, Miriam Merenciano, Sara Guirao-Rico, Vivien Horváth, Darren J. Obbard, Elena Pasyukova, Vladimir E. Alatortsev, Cristina P. Vieira, Jorge Vieira, Jorge Roberto Torres, Iryna Kozeretska, Oleksandr M. Maistrenko, Catherine Montchamp-Moreau, Dmitry V. Mukha, Heather E. Machado, Keric Lamb, Tânia Paulo, Leeban Yusuf, Antonio Barbadilla, Dmitri Petrov, Paul Schmidt, Josefa Gonzalez, Thomas Flatt, Alan O. Bergland, 2021, Molecular Biology and Evolution on p. 5782-5805
Extensive recombination suppression and epistatic selection causes chromosome-wide differentiation of a selfish sex chromosome in drosophila pseudoobscura
Zachary L. Fuller, Spencer A. Koury, Christopher J. Leonard, Randee E. Young, Kobe Ikegami, Jonathan Westlake, Stephen Richards, Stephen W. Schaeffer, Nitin Phadnis, 2020, Genetics on p. 205-226
How chromosomal rearrangements shape adaptation and speciation: Case studies in Drosophila pseudoobscura and its sibling species Drosophila persimilis
Zachary L. Fuller, Spencer A. Koury, Nitin Phadnis, Stephen W. Schaeffer, 2019, Molecular Ecology on p. 1283-1301
How chromosomal rearrangements shape adaptation and speciation: Case studies in Drosophila pseudoobscura and its sibling species Drosophila persimilis.
Z Fuller, S Koury, N Phadnis, Stephen Schaeffer, 2018, Molecular ecology
Most-Cited Papers
Ancestral polymorphisms explain the role of chromosomal inversions in speciation
Zachary L. Fuller, Christopher J. Leonard, Randee E. Young, Stephen W. Schaeffer, Nitin Phadnis, 2018, PLoS Genetics
How chromosomal rearrangements shape adaptation and speciation: Case studies in Drosophila pseudoobscura and its sibling species Drosophila persimilis
Zachary L. Fuller, Spencer A. Koury, Nitin Phadnis, Stephen W. Schaeffer, 2019, Molecular Ecology on p. 1283-1301
Broad geographic sampling reveals the shared basis and environmental correlates of seasonal adaptation in drosophila
Heather E. Machado, Alan O. Bergland, Ryan Taylor, Susanne Tilk, Emily Behrman, Kelly Dyer, Daniel K. Fabian, Thomas Flatt, Josefa González, Talia L. Karasov, Bernard Kim, Iryna Kozeretska, Brian P. Lazzaro, Thomas J.S. Merritt, John E. Pool, Katherine O’brien, Subhash Rajpurohit, Paula R. Roy, Stephen W. Schaeffer, Svitlana Serga, Paul Schmidt, Dmitri A. Petrov, 2021, eLife
Genomics of natural populations: How differentially expressed genes shape the evolution of chromosomal inversions in Drosophila pseudoobscura
Zachary L. Fuller, Gwilym D. Haynes, Stephen Richards, Stephen W. Schaeffer, 2016, Genetics on p. 287-301
Genomics of natural populations: Evolutionary forces that establish and maintain gene arrangements in Drosophila pseudoobscura
Zachary L. Fuller, Gwilym D. Haynes, Stephen Richards, Stephen W. Schaeffer, 2017, Molecular Ecology on p. 6539-6562
Species distribution and population connectivity of deep-sea mussels at hydrocarbon seeps in the Gulf of Mexico
Baptiste Faure, Stephen W. Schaeffer, Charles R. Fisher, 2015, PLoS One on p. e0118460
Drosophila Evolution over Space and Time (DEST): A New Population Genomics Resource
Martin Kapun, Joaquin C.B. Nunez, María Bogaerts-Márquez, Jesús Murga-Moreno, Margot Paris, Joseph Outten, Marta Coronado-Zamora, Courtney Tern, Omar Rota-Stabelli, Maria P. García Guerreiro, Sònia Casillas, Dorcas J. Orengo, Eva Puerma, Maaria Kankare, Lino Ometto, Volker Loeschcke, Banu S. Onder, Jessica K. Abbott, Stephen W. Schaeffer, Subhash Rajpurohit, Emily L. Behrman, Mads F. Schou, Thomas J.S. Merritt, Brian P. Lazzaro, Amanda Glaser-Schmitt, Eliza Argyridou, Fabian Staubach, Yun Wang, Eran Tauber, Svitlana V. Serga, Daniel K. Fabian, Kelly A. Dyer, Christopher W. Wheat, John Parsch, Sonja Grath, Marija Savic Veselinovic, Marina Stamenkovic-Radak, Mihailo Jelic, Antonio J. Buendía-Ruíz, Maria Josefa Gómez-Julián, Maria Luisa Espinosa-Jimenez, Francisco D. Gallardo-Jiménez, Aleksandra Patenkovic, Katarina Eric, Marija Tanaskovic, Anna Ullastres, Lain Guio, Miriam Merenciano, Sara Guirao-Rico, Vivien Horváth, Darren J. Obbard, Elena Pasyukova, Vladimir E. Alatortsev, Cristina P. Vieira, Jorge Vieira, Jorge Roberto Torres, Iryna Kozeretska, Oleksandr M. Maistrenko, Catherine Montchamp-Moreau, Dmitry V. Mukha, Heather E. Machado, Keric Lamb, Tânia Paulo, Leeban Yusuf, Antonio Barbadilla, Dmitri Petrov, Paul Schmidt, Josefa Gonzalez, Thomas Flatt, Alan O. Bergland, 2021, Molecular Biology and Evolution on p. 5782-5805
Depth-dependent gene flow in Gulf of Mexico cold seep Lamellibrachia tubeworms (Annelida, Siboglinidae)
Dominique A. Cowart, Kenneth M. Halanych, Stephen W. Schaeffer, Charles R. Fisher, 2014, Journal of Aquatic Ecosystem Health on p. 139-154
Muller “elements” in Drosophila: How the search for the genetic basis for speciation led to the birth of comparative genomics
Stephen W. Schaeffer, 2018, Genetics on p. 3-13
Extensive recombination suppression and epistatic selection causes chromosome-wide differentiation of a selfish sex chromosome in drosophila pseudoobscura
Zachary L. Fuller, Spencer A. Koury, Christopher J. Leonard, Randee E. Young, Kobe Ikegami, Jonathan Westlake, Stephen Richards, Stephen W. Schaeffer, Nitin Phadnis, 2020, Genetics on p. 205-226