Stephen Schaeffer

Professor of Biology

Stephen Schaeffer

Research Summary

Population Genetics and Genomics of Chromosomal Rearrangements in Drosophila

Huck Affiliations

Links

Publication Tags

Genes Drosophila Gulf Of Mexico Phylogeny Population Genetics Hydrocarbons Gene Flow Chromosomes Hemoglobin Gene Genomics Microsatellite Repeats Gene Frequency Polychaeta Population Linkage Disequilibrium Chromosome Mapping Alleles Metagenomics High Throughput Nucleotide Sequencing Genetic Recombination Gene Order Population Structure Gulf Siboglinidae

Most Recent Papers

How chromosomal rearrangements shape adaptation and speciation

Zachary L. Fuller, Spencer A. Koury, Nitin Phadnis, Stephen Wade Schaeffer, 2019, Molecular ecology on p. 1283-1301

Muller “elements” in Drosophila

Stephen Wade Schaeffer, 2018, Genetics on p. 3-13

Ancestral polymorphisms explain the role of chromosomal inversions in speciation

Zachary L. Fuller, Christopher J. Leonard, Randee E. Young, Stephen Wade Schaeffer, Nitin Phadnis, 2018, PLoS genetics

Evolution of Single-Domain Globins in Hydrothermal Vent Scale-Worms

J. Projecto-Garcia, A. S. Le Port, T. Govindji, D. Jollivet, Stephen Wade Schaeffer, S. Hourdez, 2017, Journal Of Molecular Evolution on p. 172-187

Genomics of natural populations

Zachary L. Fuller, Gwilym D. Haynes, Stephen Richards, Stephen Wade Schaeffer, 2017, Molecular ecology on p. 6539-6562

Exemplar or matching

Zhaoming Yin, Jijun Tang, Stephen Wade Schaeffer, David A. Bader, 2016, Journal of Combinatorial Optimization on p. 1165-1181

Genomics of natural populations

Zachary L. Fuller, Gwilym D. Haynes, Stephen Richards, Stephen Wade Schaeffer, 2016, Genetics on p. 287-301

Investigation of population structure in Gulf of Mexico Seepiophila jonesi (Polychaeta, Siboglinidae) using cross-amplified microsatellite loci

Chunya Huang, Stephen W. Schaeffer, Charles R. Fisher, Dominique A. Cowart, 2016, PeerJ

Selective forces acting during multi-domain protein evolution

Joana Projecto-Garcia, Didier Jollivet, Jean Mary, François H. Lallier, Stephen Wade Schaeffer, Stéphane Hourdez, 2015, SpringerPlus

Species distribution and population connectivity of deep-sea mussels at hydrocarbon seeps in the Gulf of Mexico

Baptiste Faure, Stephen W. Schaeffer, Charles R. Fisher, 2015, PLoS One

High-Impact Papers

Species boundaries of Gulf of Mexico vestimentiferans (Polychaeta, Siboglinidae) inferred from mitochondrial genes

Maria Pia Miglietta, Stephane Hourdez, Dominique A. Cowart, Stephen W. Schaeffer, Charles Fisher, 2010, Deep-Sea Research Part II: Topical Studies in Oceanography on p. 1916-1925

Genomics of natural populations

Zachary L. Fuller, Gwilym D. Haynes, Stephen Richards, Stephen Wade Schaeffer, 2016, Genetics on p. 287-301

Restriction to large-scale gene flow vs. regional panmixia among cold seep Escarpia spp. (Polychaeta, Siboglinidae)

Dominique A. Cowart, Chunya Huang, Sophie Arnaud-Haond, Susan L. Carney, Charles R. Fisher, Stephen W. Schaeffer, 2013, Molecular ecology on p. 4147-4162

Species distribution and population connectivity of deep-sea mussels at hydrocarbon seeps in the Gulf of Mexico

Baptiste Faure, Stephen W. Schaeffer, Charles R. Fisher, 2015, PLoS One

Genomics of natural populations

Zachary L. Fuller, Gwilym D. Haynes, Stephen Richards, Stephen Wade Schaeffer, 2017, Molecular ecology on p. 6539-6562

Adaptive evolution of genes duplicated from the drosophila pseudoobscura neo-X chromosome

Richard P. Meisel, Benedict B. Hilldorfer, Jessica L. Koch, Steven Lockton, Stephen Wade Schaeffer, 2010, Molecular Biology and Evolution on p. 1963-1978

Molecular population genetics of inversion breakpoint regions in Drosophila pseudoobscura

Andre G. Wallace, Don Detweiler, Stephen Wade Schaeffer, 2013, G3: Genes, Genomes, Genetics on p. 1151-1163

Depth-dependent gene flow in Gulf of Mexico cold seep Lamellibrachia tubeworms (Annelida, Siboglinidae)

Dominique A. Cowart, Kenneth M. Halanych, Stephen W. Schaeffer, Charles R. Fisher, 2014, Hydrobiologia on p. 139-154

Origin and evolution of the unique tetra-domain hemoglobin from the hydrothermal vent scale worm branchipolynoe

J. Projecto-Garcia, N. Zorn, D. Jollivet, Stephen Wade Schaeffer, F. H. Lallier, S. Hourdez, 2010, Molecular biology and evolution on p. 143-152

Evidence for stabilizing selection on codon usage in chromosomal rearrangements of Drosophila pseudoobscura

Zachary L. Fuller, Gwilym D. Haynes, Dianhui Zhu, Matthew Batterton, Hsu Chao, Shannon Dugan, Mehwish Javaid, Joy C. Jayaseelan, Sandra Lee, Mingmei Li, Fiona Ongeri, Sulan Qi, Yi Han, Harshavardhan Doddapaneni, Stephen Richards, Stephen Wade Schaeffer, 2014, G3: Genes, Genomes, Genetics on p. 2433-2449