Bio
Biological physics and network modeling.
Publication Tags
Signal Transduction Calcium Biological Systems Proteins Genes Abscisic Acid Dynamic Models Therapeutics Attractor Neoplasms Transcriptome Cells Modeling Antibiotics Infection Perturbation Methodology Genome Model Heterotrimeric Gtp Binding Proteins Vertex Of A Graph Feedback Arabidopsis Cancer Oscillation
Most Recent Papers
A feedback loop of conditionally stable circuits drives the cell cycle from checkpoint to checkpoint
Dávid Deritei, Jordan Rozum, Erzsébet Ravasz Regan, Réka Albert, 2019, Scientific reports
Experimental species introduction shapes network interactions in a plant-pollinator community
L. Russo, R. Albert, C. Campbell, K. Shea, 2019, Biological Invasions on p. 3505-3519
Systems-level network modeling of Small Cell Lung Cancer subtypes identifies master regulators and destabilizers
David J. Wooten, Sarah M. Groves, Darren R. Tyson, Qi Liu, Jing S. Lim, Réka Albert, Carlos F. Lopez, Julien Sage, Vito Quaranta, 2019, PLoS computational biology on p. e1007343
Towards control of cellular decision-making networks in the epithelial-to-mesenchymal transition
Jorge Gómez Tejeda Zañudo, M. Tyler Guinn, Kevin Farquhar, Mariola Szenk, Steven N. Steinway, Gábor Balázsi, Réka Albert, 2019, Physical Biology
Edgetic perturbations to eliminate fixed-point attractors in Boolean regulatory networks
Colin Campbell, Reka Z. Albert, 2019, Chaos
Model-driven discovery of calcium-related protein-phosphatase inhibition in plant guard cell signaling
Parul Maheshwari, Hao Du, Jen Sheen, Sarah M. Assmann, Reka Albert, 2019, PLoS computational biology
Self-sustaining positive feedback loops in discrete and continuous systems
Jordan C. Rozum, Reka Z. Albert, 2018, Journal of Theoretical Biology on p. 36-44
Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks
Reka Z. Albert, John Baillieul, Adilson E. Motter, 2018, IEEE Transactions on Control of Network Systems on p. 690-693
Target control in logical models using the domain of influence of nodes
Gang Yang, Jorge Gómez Tejeda Zañudo, Réka Albert, 2018, Frontiers in Physiology
General method to find the attractors of discrete dynamic models of biological systems
Xiao Gan, Reka Z. Albert, 2018, Physical Review E
Recent Most-Cited Papers
Border control - A membrane-linked interactome of Arabidopsis
Alexander M. Jones, Yuanhu Xuan, Meng Xu, Rui Sheng Wang, Cheng Hsun Ho, Sylvie Lalonde, Chang Hun You, Maria I. Sardi, Saman A. Parsa, Erika Smith-Valle, Tianying Su, Keith A. Frazer, Guillaume Pilot, Réjane Pratelli, Guido Grossmann, Biswa R. Acharya, Heng Cheng Hu, Cawas Engineer, Florent Villiers, Chuanli Ju, Kouji Takeda, Zhao Su, Qunfeng Dong, Sarah M. Assmann, Jin Chen, June M. Kwak, Julian I. Schroeder, Reka Albert, Seung Y. Rhee, Wolf B. Frommer, 2014, Science on p. 711-716
Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells
Rui Sheng Wang, Sona Pandey, Song Li, Timothy E. Gookin, Zhixin Zhao, Réka Albert, Sarah M. Assmann, 2011, BMC genomics
Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation
Steven Nathaniel Steinway, Jorge G.T. Zanudo, Wei Ding, Carl Bart Rountree, David J. Feith, Thomas P. Loughran, Reka Albert, 2014, Cancer Research on p. 5963-5977
Attractor analysis of asynchronous Boolean models of signal transduction networks
Assieh Saadatpour, Istvan Albert, Reka Z. Albert, 2010, Journal of Theoretical Biology on p. 641-656
Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action
Sona Pandey, Rui Sheng Wang, Liza Wilson, Song Li, Zhixin Zhao, Timothy E. Gookin, Sarah M. Assmann, Réka Albert, 2010, Molecular Systems Biology
Cell Fate Reprogramming by Control of Intracellular Network Dynamics
Jorge G.T. Zañudo, Réka Albert, 2015, PLoS computational biology
Complex networks
Liying Cui, Soundar Rajan Tirupatikumara, Reka Z. Albert, 2010, IEEE Circuits and Systems Magazine on p. 10-25
A network model for plant-pollinator community assembly
Colin Campbell, Suann Yang, Reka Z. Albert, Katriona Shea, 2011, Proceedings of the National Academy of Sciences of the United States of America on p. 197-202
Boolean modeling of biological regulatory networks
Assieh Saadatpour, Réka Albert, 2013, Methods on p. 3-12
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome
Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran, Jason A. Papin, Reka Albert, 2015, PLoS computational biology