Reka Albert
Distinguished Professor of Physics and Biology

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152E Davey Laboratory
University Park, PA 16802 - rza1@psu.edu
- 814-865-1141
Research Summary
Biological physics and network modeling.
Huck Affiliations
- Center for Infectious Disease Dynamics
- Bioinformatics and Genomics
- Center for Mathematical Biology
- Insect Biodiversity Center
Links
Publication Tags
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Dynamic Models Cells Ecosystem Arabidopsis Feedback Antibiotics Attractor Genes Infection Interaction Neoplasms Abscisic Acid Phenotype Genome Community Positive Feedback Network Dynamics Epithelial Mesenchymal Transition Clostridium Difficile Gene Regulatory Networks Libraries Metabolic Networks And Pathways Ecosystems Metabolome Transforming Growth Factor BetaMost Recent Publications
Predicting cascading extinctions and efficient restoration strategies in plant–pollinator networks via generalized positive feedback loops
Fatemeh Sadat Fatemi Nasrollahi, Colin Campbell, Réka Albert, 2023, Scientific Reports
Leveraging network structure in nonlinear control
Jordan Rozum, Réka Albert, 2022, npj Systems Biology and Applications
Inference of a Boolean Network From Causal Logic Implications
Parul Maheshwari, Parul Maheswari, Sarah Assmann, Reka Albert, 2022, Frontiers in Genetics on p. 836856
Structure-based approach to identifying small sets of driver nodes in biological networks
Eli Newby, Jorge Gomez Tejeda Zanudo, Reka Albert, 2022, Chaos
Pystablemotifs: Python library for attractor identification and control in Boolean networks
Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, Jorge Gómez Tejeda Zañudo, Réka Albert, 2022, Bioinformatics on p. 1465-1466
Whole community invasions and the integration of novel ecosystems
Colin Campbell, Laura Russo, Réka Albert, Angus Buckling, Katriona Shea, 2022, PLoS Computational Biology
Detecting network anomalies using Forman–Ricci curvature and a case study for human brain networks
Tanima Chatterjee, Réka Albert, Stuti Thapliyal, Nazanin Azarhooshang, Bhaskar DasGupta, 2021, Scientific Reports
Relationships among generalized positive feedback loops determine possible community outcomes in plant-pollinator interaction networks
Fatemeh Sadat Fatemi Nasrollahi, Jorge Gómez Tejeda Zañudo, Colin Campbell, Réka Albert, 2021, Physical Review E
Context-specific regulation of lysosomal lipolysis through network-level diverting of transcription factor interactions
Vinod K. Mony, Anna Drangowska-Way, Reka Albert, Emma Harrison, Abbas Ghaddar, Mary Kate Horak, Wenfan Ke, Eyleen J. O’Rourke, 2021, Proceedings of the National Academy of Sciences of the United States of America
Cell line-specific network models of er breast cancer identify potential pi3kainhibitor resistance mechanisms and drug combinations
Jorge Gómez Tejeda Zañudo, Pingping Mao, Clara Alcon, Kailey Kowalski, Gabriela N. Johnson, Guotai Xu, Jose Baselga, Maurizio Scaltriti, Anthony Letai, Joan Montero, Réka Albert, Nikhil Wagle, 2021, Cancer Research on p. 4603-4617
Most-Cited Papers
Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation
Steven Nathaniel Steinway, Jorge G.T. Zanudo, Wei Ding, Carl Bart Rountree, David J. Feith, Thomas P. Loughran, Reka Albert, 2014, Cancer Research on p. 5963-5977
Border control - A membrane-linked interactome of Arabidopsis
Alexander M. Jones, Yuanhu Xuan, Meng Xu, Rui Sheng Wang, Cheng Hsun Ho, Sylvie Lalonde, Chang Hun You, Maria I. Sardi, Saman A. Parsa, Erika Smith-Valle, Tianying Su, Keith A. Frazer, Guillaume Pilot, Réjane Pratelli, Guido Grossmann, Biswa R. Acharya, Heng Cheng Hu, Cawas Engineer, Florent Villiers, Chuanli Ju, Kouji Takeda, Zhao Su, Qunfeng Dong, Sarah M. Assmann, Jin Chen, June M. Kwak, Julian I. Schroeder, Reka Albert, Seung Y. Rhee, Wolf B. Frommer, 2014, Science on p. 711-716
Structure-based control of complex networks with nonlinear dynamics
Jorge Gomez Tejeda Zañudo, Gang Yang, Réka Albert, Herbert Levine, 2017, Proceedings of the National Academy of Sciences of the United States of America on p. 7234-7239
Cell Fate Reprogramming by Control of Intracellular Network Dynamics
Jorge G.T. Zañudo, Réka Albert, 2015, PLoS Computational Biology
Boolean modeling of biological regulatory networks: A methodology tutorial
Assieh Saadatpour, Réka Albert, 2013, ImmunoMethods on p. 3-12
An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks
Jorge G.T. Zañudo, Réka Albert, 2013, Chaos
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome
Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran, Jason A. Papin, Reka Albert, 2015, PLoS Computational Biology
Boolean modeling: A logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions
Réka Albert, Juilee Thakar, 2014, Wiley Interdisciplinary Reviews: Systems Biology and Medicine on p. 353-369
Combinatorial interventions inhibit TGFβ-driven epithelial-to-mesenchymal transition and support hybrid cellular phenotypes
Steven Nathaniel Steinway, Jorge Gomez Tejeda Zañudo, Paul J. Michel, David J. Feith, Thomas P. Loughran, Reka Albert, 2015, npj Systems Biology and Applications
Abscisic acid-responsive guard cell metabolomes of Arabidopsis wild-type and gpa1 G-protein mutants
Xiaofen Jin, Rui Sheng Wang, Mengmeng Zhu, Byeong Wook Jeon, Reka Albert, Sixue Chen, Sarah M. Assmann, 2013, Plant Cell on p. 4789-4811