Bio
Biological physics and network modeling.
Publication Tags
Signal Transduction Abscisic Acid Dynamic Models Genes T Cells Biological Systems T Lymphocytes Feedback Complex Networks Therapeutics Gene Regulatory Networks Lymphocytes Leukemia Attractor Heterotrimeric Gtp Binding Proteins Methodology Structural Analysis Cells Transcriptome Perturbation Proteins Robust Control Biological Networks Vertex Of A Graph FrameworkMost Recent Papers
Edgetic perturbations to eliminate fixed-point attractors in Boolean regulatory networks
Colin Campbell, Reka Z. Albert, 2019, Chaos
Self-sustaining positive feedback loops in discrete and continuous systems
Jordan C. Rozum, Reka Z. Albert, 2018, Journal of Theoretical Biology on p. 36-44
Identifying (un)controllable dynamical behavior in complex networks
Jordan C. Rozum, Reka Z. Albert, 2018, PLoS computational biology
Introduction to the Special Issue on Approaches to Control Biological and Biologically Inspired Networks
Reka Z. Albert, John Baillieul, Adilson E. Motter, 2018, IEEE Transactions on Control of Network Systems on p. 690-693
Target control in logical models using the domain of influence of nodes
Gang Yang, Jorge Gómez Tejeda Zañudo, Reka Z. Albert, 2018, Frontiers in Physiology
General method to find the attractors of discrete dynamic models of biological systems
Xiao Gan, Reka Z. Albert, 2018, Physical Review E
A framework to find the logic backbone of a biological network
Parul Maheshwari, Reka Z. Albert, 2017, BMC systems biology
A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops
Reka Z. Albert, Biswa R. Acharya, Byeong Wook Jeon, Jorge G.T. Zañudo, Mengmeng Zhu, Karim Osman, Sarah Mary Assmann, 2017, PLoS Biology
A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops
Reka Z. Albert, Biswa R. Acharya, Byeong Wook Jeon, Jorge G.T. Zañudo, Mengmeng Zhu, Karim Osman, Sarah Mary Assmann, 2017, PLoS Biology
Structure-based control of complex networks with nonlinear dynamics
Jorge Gomez Tejeda Zañudo, Gang Yang, Reka Z. Albert, Herbert Levine, 2017, Proceedings of the National Academy of Sciences of the United States of America on p. 7234-7239
Recent High-Impact Papers
Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells
Rui Sheng Wang, Sona Pandey, Song Li, Timothy E. Gookin, Zhixin Zhao, Reka Z. Albert, Sarah Mary Assmann, 2011, BMC Genomics
Attractor analysis of asynchronous Boolean models of signal transduction networks
Assieh Saadatpour, Istvan Albert, Reka Z. Albert, 2010, Journal of Theoretical Biology on p. 641-656
Border control - A membrane-linked interactome of Arabidopsis
Alexander M. Jones, Yuanhu Xuan, Meng Xu, Rui Sheng Wang, Cheng Hsun Ho, Sylvie Lalonde, Chang Hun You, Maria I. Sardi, Saman A. Parsa, Erika Smith-Valle, Tianying Su, Keith A. Frazer, Guillaume Pilot, Réjane Pratelli, Guido Grossmann, Biswa R. Acharya, Heng Cheng Hu, Cawas Engineer, Florent Villiers, Chuanli Ju, Kouji Takeda, Zhao Su, Qunfeng Dong, Sarah Mary Assmann, Jin Chen, June M. Kwak, Julian I. Schroeder, Reka Z. Albert, Seung Y. Rhee, Wolf B. Frommer, 2014, Science on p. 711-716
Dynamical and structural analysis of a t cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia
Assieh Saadatpour, Rui Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, Istvan Albert, Reka Z. Albert, 2011, PLoS Computational Biology
Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation
Steven Nathaniel Steinway, Jorge G.T. Zanudo, Wei Ding, Carl Bart Rountree, David J. Feith, Thomas P. Loughran, Reka Z. Albert, 2014, Cancer Research on p. 5963-5977
Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action
Sona Pandey, Rui Sheng Wang, Liza Anne Wilson, Song Li, Zhixin Zhao, Timothy E. Gookin, Sarah Mary Assmann, Reka Z. Albert, 2010, Molecular Systems Biology
A network model for plant-pollinator community assembly
Colin Campbell, Suann Yang, Reka Z. Albert, Katriona Shea, 2011, Proceedings of the National Academy of Sciences of the United States of America on p. 197-202
Complex networks
Liying Cui, Soundar Rajan Tirupatikumara, Reka Z. Albert, 2010, IEEE Circuits and Systems Magazine on p. 10-25
Boolean modeling of biological regulatory networks
Assieh Saadatpour, Reka Z. Albert, 2013, Methods on p. 3-12
Cell Fate Reprogramming by Control of Intracellular Network Dynamics
Jorge G.T. Zañudo, Reka Z. Albert, 2015, PLoS computational biology