Reka Albert
Distinguished Professor of Physics and Biology
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152E Davey Laboratory
University Park, PA 16802 - rza1@psu.edu
- 814-865-1141
Research Summary
Biological physics and network modeling.
Huck Affiliations
- Center for Infectious Disease Dynamics
- Bioinformatics and Genomics
- Center for Mathematical Biology
- Insect Biodiversity Center
Links
Publication Tags
Dynamic Models Cells Therapeutics Antibiotics Infection Genes Neoplasms Phenotype Genome Attractor Epithelial Mesenchymal Transition Clostridium Difficile Interaction Breast Neoplasms Positive Feedback Libraries Metabolic Networks And Pathways Network Dynamics Gene Regulatory Networks Transforming Growth Factor Beta Cell Biological Phenomena Stem Cells Methodology MetabolismMost Recent Publications
Inference of a Boolean Network From Causal Logic Implications
Parul Maheshwari, Sarah M. Assmann, Reka Albert, 2022, Frontiers in Genetics
Whole community invasions and the integration of novel ecosystems
Colin Campbell, Laura Russo, Réka Albert, Angus Buckling, Katriona Shea, 2022, PLoS Computational Biology
Structure-based approach to identifying small sets of driver nodes in biological networks
Eli Newby, Jorge Gomez Tejeda Zanudo, Reka Albert, 2022, Chaos
Pystablemotifs: Python library for attractor identification and control in Boolean networks
Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, Jorge Gómez Tejeda Zañudo, Réka Albert, 2022, Bioinformatics on p. 1465-1466
Detecting network anomalies using Forman–Ricci curvature and a case study for human brain networks
Tanima Chatterjee, Réka Albert, Stuti Thapliyal, Nazanin Azarhooshang, Bhaskar DasGupta, 2021, Scientific Reports
Relationships among generalized positive feedback loops determine possible community outcomes in plant-pollinator interaction networks
Fatemeh Sadat Fatemi Nasrollahi, Jorge Gómez Tejeda Zañudo, Colin Campbell, Réka Albert, 2021, Physical Review E
Context-specific regulation of lysosomal lipolysis through network-level diverting of transcription factor interactions
Vinod K. Mony, Anna Drangowska-Way, Reka Albert, Emma Harrison, Abbas Ghaddar, Mary Kate Horak, Wenfan Ke, Eyleen J. O’Rourke, 2021, Proceedings of the National Academy of Sciences of the United States of America
Cell line-specific network models of er breast cancer identify potential pi3kainhibitor resistance mechanisms and drug combinations
Jorge Gómez Tejeda Zañudo, Pingping Mao, Clara Alcon, Kailey Kowalski, Gabriela N. Johnson, Guotai Xu, Jose Baselga, Maurizio Scaltriti, Anthony Letai, Joan Montero, Réka Albert, Nikhil Wagle, 2021, Cancer Research on p. 4603-4617
Er+ breast cancer strongly depends on mcl-1 and bcl-xl anti-apoptotic proteins
Clara Alcon, Jorge Gómez Tejeda Zañudo, Reka Albert, Nikhil Wagle, Maurizio Scaltriti, Anthony Letai, Josep Samitier, Joan Montero, 2021, Cells
Parity and time reversal elucidate both decision-making in empirical models and attractor scaling in critical Boolean networks
Jordan C. Rozum, Jorge Gómez Tejeda Zañudo, Xiao Gan, Dávid Deritei, Réka Albert, 2021, Science advances
Most-Cited Papers
Boolean modeling in systems biology: An overview of methodology and applications
Rui Sheng Wang, Assieh Saadatpour, Réka Albert, 2012, Physical Biology
Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation
Steven Nathaniel Steinway, Jorge G.T. Zanudo, Wei Ding, Carl Bart Rountree, David J. Feith, Thomas P. Loughran, Reka Albert, 2014, Cancer Research on p. 5963-5977
Border control - A membrane-linked interactome of Arabidopsis
Alexander M. Jones, Yuanhu Xuan, Meng Xu, Rui Sheng Wang, Cheng Hsun Ho, Sylvie Lalonde, Chang Hun You, Maria I. Sardi, Saman A. Parsa, Erika Smith-Valle, Tianying Su, Keith A. Frazer, Guillaume Pilot, Réjane Pratelli, Guido Grossmann, Biswa R. Acharya, Heng Cheng Hu, Cawas Engineer, Florent Villiers, Chuanli Ju, Kouji Takeda, Zhao Su, Qunfeng Dong, Sarah M. Assmann, Jin Chen, June M. Kwak, Julian I. Schroeder, Reka Albert, Seung Y. Rhee, Wolf B. Frommer, 2014, Science on p. 711-716
Structure-based control of complex networks with nonlinear dynamics
Jorge Gomez Tejeda Zañudo, Gang Yang, Réka Albert, Herbert Levine, 2017, Proceedings of the National Academy of Sciences of the United States of America on p. 7234-7239
Cell Fate Reprogramming by Control of Intracellular Network Dynamics
Jorge G.T. Zañudo, Réka Albert, 2015, PLoS Computational Biology
Boolean modeling of biological regulatory networks: A methodology tutorial
Assieh Saadatpour, Réka Albert, 2013, ImmunoMethods on p. 3-12
Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome
Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran, Jason A. Papin, Reka Albert, 2015, PLoS Computational Biology
An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks
Jorge G.T. Zañudo, Réka Albert, 2013, Chaos
Boolean modeling: A logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions
Réka Albert, Juilee Thakar, 2014, Wiley Interdisciplinary Reviews: Systems Biology and Medicine on p. 353-369
Combinatorial interventions inhibit TGFβ-driven epithelial-to-mesenchymal transition and support hybrid cellular phenotypes
Steven Nathaniel Steinway, Jorge Gomez Tejeda Zañudo, Paul J. Michel, David J. Feith, Thomas P. Loughran, Reka Albert, 2015, npj Systems Biology and Applications