Bio
Biological physics and network modeling.
Most Recent Papers
Guest Editorial
Reka Albert, John Baillieul, Adilson E. Motter, 2018, IEEE Transactions on Control of Network Systems
Target control in logical models using the domain of influence of nodes
Gang Yang, Jorge Gómez Tejeda Zañudo, Réka Albert, 2018, Frontiers in Physiology
General method to find the attractors of discrete dynamic models of biological systems
Xiao Gan, Réka Albert, 2018, Physical Review E
A framework to find the logic backbone of a biological network
Parul Maheshwari, Réka Albert, 2017, BMC systems biology
A new discrete dynamic model of ABA-induced stomatal closure predicts key feedback loops
Réka Albert, Biswa R. Acharya, Byeong Wook Jeon, Jorge G.T. Zañudo, Mengmeng Zhu, Karim Osman, Sarah M. Assmann, 2017, PLoS Biology
Structure-based control of complex networks with nonlinear dynamics
Jorge Gomez Tejeda Zañudo, Gang Yang, Réka Albert, Herbert Levine, 2017, Proceedings of the National Academy of Sciences of the United States of America on p. 7234-7239
Correlations in the degeneracy of structurally controllable topologies for networks
Colin Campbell, Steven Aucott, Justin Ruths, Derek Ruths, Katriona Shea, Réka Albert, 2017, Scientific Reports
Compensatory interactions to stabilize multiple steady states or mitigate the effects of multiple deregulations in biological networks
Gang Yang, Colin Campbell, Réka Albert, 2016, Physical Review E
Top-down network analysis characterizes hidden termite–termite interactions
Colin Campbell, Laura Russo, Alessandra Marins, Og DeSouza, Karsten Schönrogge, David Mortensen, John Tooker, Réka Albert, Katriona Shea, 2016, Ecology and Evolution on p. 6178-6188
Node-independent elementary signaling modes
Zhongyao Sun, Réka Albert, 2016, Network Science on p. 273-292
Recent High-Impact Papers
Common and unique elements of the ABA-regulated transcriptome of Arabidopsis guard cells
Rui Sheng Wang, Sona Pandey, Song Li, Timothy E. Gookin, Zhixin Zhao, Réka Albert, Sarah M. Assmann, 2011, BMC genomics
Attractor analysis of asynchronous Boolean models of signal transduction networks
Assieh Saadatpour, István Albert, Réka Albert, 2010, Journal of Theoretical Biology on p. 641-656
Dynamical and structural analysis of a t cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia
Assieh Saadatpour, Rui Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, István Albert, Réka Albert, 2011, PLoS Computational Biology
Border control - A membrane-linked interactome of Arabidopsis
Alexander M. Jones, Yuanhu Xuan, Meng Xu, Rui Sheng Wang, Cheng Hsun Ho, Sylvie Lalonde, Chang Hun You, Maria I. Sardi, Saman A. Parsa, Erika Smith-Valle, Tianying Su, Keith A. Frazer, Guillaume Pilot, Réjane Pratelli, Guido Grossmann, Biswa R. Acharya, Heng Cheng Hu, Cawas Engineer, Florent Villiers, Chuanli Ju, Kouji Takeda, Zhao Su, Qunfeng Dong, Sarah M. Assmann, Jin Chen, June M. Kwak, Julian I. Schroeder, Reka Albert, Seung Y. Rhee, Wolf B. Frommer, 2014, Science on p. 711-716
Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation
Steven Nathaniel Steinway, Jorge G.T. Zanudo, Wei Ding, Carl Bart Rountree, David J. Feith, Thomas P. Loughran, Reka Albert, 2014, Cancer Research on p. 5963-5977
Boolean modeling of transcriptome data reveals novel modes of heterotrimeric G-protein action
Sona Pandey, Rui Sheng Wang, Liza Wilson, Song Li, Zhixin Zhao, Timothy E. Gookin, Sarah M. Assmann, Réka Albert, 2010, Molecular Systems Biology
A network model for plant-pollinator community assembly
Colin Campbell, Suann Yang, Réka Albert, Katriona Shea, 2011, Proceedings of the National Academy of Sciences of the United States of America on p. 197-202
Complex networks
Liying Cui, Soundar Kumara, Réka Albert, 2010, IEEE Circuits and Systems Magazine on p. 10-25
Elementary signaling modes predict the essentiality of signal transduction network components
Rui Sheng Wang, Réka Albert, 2011, BMC Systems Biology
Boolean modeling of biological regulatory networks
Assieh Saadatpour, Réka Albert, 2013, Methods on p. 3-12