Reka Albert

Distinguished Professor of Physics and Biology

Reka Albert

Research Summary

Biological physics and network modeling.

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Publication Tags

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Dynamic Models Cells Ecosystem Feedback Arabidopsis Antibiotics Attractor Genes Infection Interaction Abscisic Acid Phenotype Genome Community Positive Feedback Neoplasms Network Dynamics Epithelial Mesenchymal Transition Libraries Gene Regulatory Networks Metabolic Networks And Pathways Metabolome Transforming Growth Factor Beta Clostridium Difficile Ecosystems

Most Recent Publications

Predicting cascading extinctions and efficient restoration strategies in plant–pollinator networks via generalized positive feedback loops

Fatemeh Sadat Fatemi Nasrollahi, Colin Campbell, Réka Albert, 2023, Scientific Reports

Structure-based approach to identify driver nodes in ensembles of biologically inspired Boolean networks

Eli Newby, Jorge Gómez Tejeda Zañudo, Réka Albert, 2023, Physical Review Research

Leveraging network structure in nonlinear control

Jordan Rozum, Réka Albert, 2022, npj Systems Biology and Applications

Inference of a Boolean Network From Causal Logic Implications

Parul Maheshwari, Parul Maheswari, Sarah Assmann, Reka Albert, 2022, Frontiers in Genetics on p. 836856

Structure-based approach to identifying small sets of driver nodes in biological networks

Eli Newby, Jorge Gomez Tejeda Zanudo, Reka Albert, 2022, Chaos

Pystablemotifs: Python library for attractor identification and control in Boolean networks

Jordan C. Rozum, Dávid Deritei, Kyu Hyong Park, Jorge Gómez Tejeda Zañudo, Réka Albert, 2022, Bioinformatics on p. 1465-1466

Whole community invasions and the integration of novel ecosystems

Colin Campbell, Laura Russo, Réka Albert, Angus Buckling, Katriona Shea, 2022, PLoS Computational Biology

Detecting network anomalies using Forman–Ricci curvature and a case study for human brain networks

Tanima Chatterjee, Réka Albert, Stuti Thapliyal, Nazanin Azarhooshang, Bhaskar DasGupta, 2021, Scientific Reports

Relationships among generalized positive feedback loops determine possible community outcomes in plant-pollinator interaction networks

Fatemeh Sadat Fatemi Nasrollahi, Jorge Gómez Tejeda Zañudo, Colin Campbell, Réka Albert, 2021, Physical Review E

Context-specific regulation of lysosomal lipolysis through network-level diverting of transcription factor interactions

Vinod K. Mony, Anna Drangowska-Way, Reka Albert, Emma Harrison, Abbas Ghaddar, Mary Kate Horak, Wenfan Ke, Eyleen J. O’Rourke, 2021, Proceedings of the National Academy of Sciences of the United States of America

Most-Cited Papers

Network modeling of TGFβ signaling in hepatocellular carcinoma epithelial-to-mesenchymal transition reveals joint sonic hedgehog and Wnt pathway activation

Steven Nathaniel Steinway, Jorge G.T. Zanudo, Wei Ding, Carl Bart Rountree, David J. Feith, Thomas P. Loughran, Reka Albert, 2014, Cancer Research on p. 5963-5977

Border control - A membrane-linked interactome of Arabidopsis

Alexander M. Jones, Yuanhu Xuan, Meng Xu, Rui Sheng Wang, Cheng Hsun Ho, Sylvie Lalonde, Chang Hun You, Maria I. Sardi, Saman A. Parsa, Erika Smith-Valle, Tianying Su, Keith A. Frazer, Guillaume Pilot, Réjane Pratelli, Guido Grossmann, Biswa R. Acharya, Heng Cheng Hu, Cawas Engineer, Florent Villiers, Chuanli Ju, Kouji Takeda, Zhao Su, Qunfeng Dong, Sarah M. Assmann, Jin Chen, June M. Kwak, Julian I. Schroeder, Reka Albert, Seung Y. Rhee, Wolf B. Frommer, 2014, Science on p. 711-716

Structure-based control of complex networks with nonlinear dynamics

Jorge Gomez Tejeda Zañudo, Gang Yang, Réka Albert, Herbert Levine, 2017, Proceedings of the National Academy of Sciences of the United States of America on p. 7234-7239

Cell Fate Reprogramming by Control of Intracellular Network Dynamics

Jorge G.T. Zañudo, Réka Albert, 2015, PLoS Computational Biology

An effective network reduction approach to find the dynamical repertoire of discrete dynamic networks

Jorge G.T. Zañudo, Réka Albert, 2013, Chaos

Boolean modeling of biological regulatory networks: A methodology tutorial

Assieh Saadatpour, Réka Albert, 2013, ImmunoMethods on p. 3-12

Inference of Network Dynamics and Metabolic Interactions in the Gut Microbiome

Steven N. Steinway, Matthew B. Biggs, Thomas P. Loughran, Jason A. Papin, Reka Albert, 2015, PLoS Computational Biology

Boolean modeling: A logic-based dynamic approach for understanding signaling and regulatory networks and for making useful predictions

Réka Albert, Juilee Thakar, 2014, Wiley Interdisciplinary Reviews: Systems Biology and Medicine on p. 353-369

Combinatorial interventions inhibit TGFβ-driven epithelial-to-mesenchymal transition and support hybrid cellular phenotypes

Steven Nathaniel Steinway, Jorge Gomez Tejeda Zañudo, Paul J. Michel, David J. Feith, Thomas P. Loughran, Reka Albert, 2015, npj Systems Biology and Applications

Abscisic acid-responsive guard cell metabolomes of Arabidopsis wild-type and gpa1 G-protein mutants

Xiaofen Jin, Rui Sheng Wang, Mengmeng Zhu, Byeong Wook Jeon, Reka Albert, Sixue Chen, Sarah M. Assmann, 2013, Plant Cell on p. 4789-4811