Justin Silverman

Assistant Professor of Information Sciences and Technology

Justin Silverman

Research Summary

Statistical methods for the analysis of biomedical data (or any other interesting data/questions)

Huck Graduate Students

Huck Affiliations


Publication Tags

These publication tags are generated from the output of this researcher. Click any tag below to view other Huck researchers working on the same topic.

Microbiota Gastrointestinal Microbiome Datasets Phylogeny Coronavirus Prebiotics Severe Acute Respiratory Syndrome Volatile Fatty Acids Gene Expression Chemical Analysis Artifacts Microorganisms Health Atopic Dermatitis Simulation Pandemics Time Human Influenza Decoding Non Alcoholic Fatty Liver Disease Microbiome Linear Models Odorant Receptors High Throughput Nucleotide Sequencing Energy Metabolism

Most Recent Publications

A Fonseca, S Kenney, E Van Syoc, S Bierly, Francisco Dini-Andreote, F Dini Andreote, Justin Silverman, J Boney, Erika Ganda, 2024, Poultry Science on p. 103604

Ancient dental calculus reveals oral microbiome shifts associated with lifestyle and disease in Great Britain

Abigail S. Gancz, Andrew G. Farrer, Michelle P. Nixon, Sterling Wright, Luis Arriola, Christina Adler, Emily R. Davenport, Neville Gully, Alan Cooper, Kate Britton, Keith Dobney, Justin D. Silverman, Laura S. Weyrich, 2023, Nature Microbiology on p. 2315-2325

Kyle C. McGovern, Michelle Pistner Nixon, Justin D. Silverman, 2023, PLoS Computational Biology

Dylan S. Eiger, Jeffrey S. Smith, Tujin Shi, Tomasz Maciej Stepniewski, Chia Feng Tsai, Christopher Honeycutt, Noelia Boldizsar, Julia Gardner, Carrie D. Nicora, Ahmed M. Moghieb, Kouki Kawakami, Issac Choi, Chloe Hicks, Kevin Zheng, Anmol Warman, Priya Alagesan, Nicole M. Knape, Ouwen Huang, Justin D. Silverman, Richard D. Smith, Asuka Inoue, Jana Selent, Jon M. Jacobs, Sudarshan Rajagopal, 2023, Cell Chemical Biology on p. 362-382.e8

Christopher Griffin, Ray Block, Justin D. Silverman, Jason Croad, Robert P. Lennon, 2023, PLoS One

Zachary C. Holmes, Max M. Villa, Heather K. Durand, Sharon Jiang, Eric P. Dallow, Brianna L. Petrone, Justin D. Silverman, Pao Hwa Lin, Lawrence A. David, 2022, Microbiome

Pedro A.B. Pereira, Drupad K. Trivedi, Justin Silverman, Ilhan Cem Duru, Lars Paulin, Petri Auvinen, Filip Scheperjans, 2022, npj Parkinson's Disease

Kevin W. Zhu, Shawn D. Burton, Maira H. Nagai, Justin D. Silverman, Claire A. de March, Matt Wachowiak, Hiroaki Matsunami, 2022, Nature Communications

E Van Syoc, E Weaver, Connie Jo Rogers, J , Justin Silverman, Ramesh Ramachandran, Erika Ganda, 2022, Frontiers in Physiology on p. 1000144

Most-Cited Papers

Nicholas G. Davies, Sam Abbott, Rosanna C. Barnard, Christopher I. Jarvis, Adam J. Kucharski, James D. Munday, Carl A.B. Pearson, Timothy W. Russell, Damien C. Tully, Alex D. Washburne, Tom Wenseleers, Amy Gimma, William Waites, Kerry L.M. Wong, Kevin van Zandvoort, Justin D. Silverman, Karla Diaz-Ordaz, Ruth Keogh, Rosalind M. Eggo, Sebastian Funk, Mark Jit, Katherine E. Atkins, W. John Edmunds, 2021, Science

James T. Morton, Clarisse Marotz, Alex Washburne, Justin Silverman, Livia S. Zaramela, Anna Edlund, Karsten Zengler, Rob Knight, 2019, Nature Communications

Justin D. Silverman, Alex D. Washburne, Sayan Mukherjee, Lawrence A. David, 2017, eLife

Allogenic Fecal Microbiota Transplantation in Patients with Nonalcoholic Fatty Liver Disease Improves Abnormal Small Intestinal Permeability: A Randomized Control Trial

Laura Craven, Adam Rahman, Seema Nair Parvathy, Melanie Beaton, Justin Silverman, Karim Qumosani, Irene Hramiak, Rob Hegele, Tisha Joy, Jon Meddings, Brad Urquhart, Ruth Harvie, Charles McKenzie, Kelly Summers, Gregor Reid, Jeremy P. Burton, Michael Silverman, 2020, American Journal of Gastroenterology on p. 1055-1065

Alex D. Washburne, Justin D. Silverman, Jonathan W. Leff, Dominic J. Bennett, John L. Darcy, Sayan Mukherjee, Noah Fierer, Lawrence A. David, 2017, PeerJ

Justin D. Silverman, Nathaniel Hupert, Alex D. Washburne, 2020, Science Translational Medicine

Justin D. Silverman, Kimberly Roche, Sayan Mukherjee, Lawrence A. David, 2020, Computational and Structural Biotechnology Journal on p. 2789-2798

Firas S. Midani, Ana A. Weil, Fahima Chowdhury, Yasmin A. Begum, Ashraful I. Khan, Meti D. Debela, Heather K. Durand, Aspen T. Reese, Sai N. Nimmagadda, Justin D. Silverman, Crystal N. Ellis, Edward T. Ryan, Stephen B. Calderwood, Jason B. Harris, Firdausi Qadri, Lawrence A. David, Regina C. Larocque, 2018, Journal of Infectious Diseases on p. 645-653

Zachary C. Holmes, Justin D. Silverman, Holly K. Dressman, Zhengzheng Wei, Eric P. Dallow, Sarah C. Armstrong, Patrick C. Seed, John F. Rawls, Lawrence A. David, 2020, mBio on p. 1-15

Justin D. Silverman, Heather K. Durand, Rachael J. Bloom, Sayan Mukherjee, Lawrence A. David, 2018, Microbiome

News Articles Featuring Justin Silverman

Probiotic feed additive boosts growth, health in poultry in place of antibiotics

Antimicrobial resistance is an increasingly serious threat for public health, and the use of antimicrobials in livestock feed has been a major contributing factor in the emergence and spread of antimicrobial resistance to many drugs, according to the U.S. National Institutes of Health.

Study of ancient British oral microbiomes reveals shift following Black Death

The Second Plague Pandemic may have led to oral microbiomes that contribute to modern-day chronic disease, according to new research

Could the Flu Uncover the Next Pandemic?

As the COVID-19 pandemic has raced across the globe and killed millions worldwide, people continue to ask: Could this have gone differently? The early months of 2020 marked a turning point where public health efforts shifted from containing the virus’ spread to mitigating its damage once that was no longer possible. But what if we had known about future surges in infection rates earlier, or had a better sense of the peaks?

Wastewater sampling may give advanced warning of potential COVID-19 outbreaks

Wastewater sampling for coronavirus on campus and in the surrounding community could alert University decision makers to a potential outbreak several days before individuals exhibit symptoms of an infection. The initiative — part of Penn State’s multilayered approach to test, monitor and mitigate for COVID-19 — could enable leaders to take swift actions to minimize the virus’s spread with the goal of helping to protect the health and safety of the community.