Istvan Albert

Istvan Albert

Associate Professor of Bioinformatics

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Most Recent Papers

Genome-wide real-time in vivo transcriptional dynamics during Plasmodium falciparum blood-stage development

Heather J. Painter, Neo Christopher Chung, Aswathy Sebastian, Istvan Albert, John D. Storey, Manuel Llinás, 2018, Nature Communications

Whole-genome sequence analysis reveals unique SNP profiles to distinguish vaccine and wild-type strains of bovine herpesvirus-1 (BoHV-1)

Shubhada K. Chothe, Aswathy Sebastian, Asha Thomas, Ruth H. Nissly, David Wolfgang, Maurice Byukusenge, Sunil Kumar Mor, Sagar M. Goyal, Istvan Albert, Deepanker Tewari, Bhushan M. Jayarao, Suresh V. Kuchipudi, 2018, Virology on p. 27-36

The influence of adolescent nicotine exposure on ethanol intake and brain gene expression

Constanza P. Silva, William J. Horton, Michael J. Caruso, Aswathy Sebastian, Laura C. Klein, Istvan Albert, Helen M. Kamens, 2018, PLoS One

Complete genome sequences of three related avian avulavirus 1 isolates from poultry farmers in Pakistan

M. Zubair Shabbir, Ruth Helmus Nissly, Abdul Ahad, Masood Rabbani, Shubhada K. Chothe, Aswathy Sebastian, Istvan Albert, Bhushan M. Jayarao, Suresh V. Kuchipudi, 2018, Genome Announcements

Whole-genome sequences of 18 bovine alphaherpesvirus 1 field isolates from Pennsylvania and Minnesota

Shubhada K. Chothe, Aswathy Sebastian, Asha Thomas, Ruth Nissly, Maurice Byukusenge, David Wolfgang, Sunil Kumar Mor, Sagar Goyal, Istvan Albert, Bhushan Jayarao, Suresh V. Kuchipudi, 2018, Genome Announcements

Whole-genome sequence of infectious pancreatic necrosis virus isolated from farmed brook trout (Salvelinus fontinalis) in Pennsylvania

Kay Palchak, Shubhada K. Chothe, Aswathy Sebastian, Ruth H. Nissly, Rhiannon Barry, Istvan Albert, Bhushan M. Jayarao, Suresh V. Kuchipudi, 2018, Genome Announcements

Puf3 participates in ribosomal biogenesis in malaria parasites

Xiaoying Liang, Kevin J. Hart, Gang Dong, Faiza A. Siddiqui, Aswathy Sebastian, Xiaolian Li, Istvan Albert, Jun Miao, Scott E. Lindner, Liwang Cui, 2018, Journal of Cell Science

Rapid magnetic isolation of extracellular vesicles via lipid-based nanoprobes

Yuan Wan, Gong Cheng, Xin Liu, Si Jie Hao, Merisa Nisic, Chuan Dong Zhu, Yi Qiu Xia, Wen Qing Li, Zhi Gang Wang, Wen Long Zhang, Shawn J. Rice, Aswathy Sebastian, Istvan Albert, Chandra P. Belani, Si Yang Zheng, 2017, Nature Biomedical Engineering

Tunable and label-free virus enrichment for ultrasensitive virus detection using carbon nanotube arrays

Yin Ting Yeh, Yi Tang, Aswathy Sebastian, Archi Dasgupta, Nestor Perea-Lopez, Istvan Albert, Huaguang Lu, Mauricio Terrones, Si Yang Zheng, 2016, Science Advances

Bioinformatic analysis of microRNA networks following the activation of the constitutive androstane receptor (CAR) in mouse liver

Ruixin Hao, Shengzhong Su, Yinan Wan, Frank Shen, Ben Niu, Denise M. Coslo, Istvan Albert, Xing Han, Curtis J. Omiecinski, 2016, Biochimica et Biophysica Acta - Gene Regulatory Mechanisms on p. 1228-1237

Recent High-Impact Papers

Nucleosome organization in the Drosophila genome

Travis N. Mavrich, Cizhong Jiang, Ilya P. Ioshikhes, Xiaoyong Li, Bryan J. Venters, Sara J. Zanton, Lynn P. Tomsho, Ji Qi, Robert L. Glaser, Stephan C. Schuster, David S. Gilmour, Istvan Albert, B. Franklin Pugh, 2008, Nature on p. 358-362

A barrier nucleosome model for statistical positioning of nucleosomes throughout the yeast genome

Travis N. Mavrich, Ilya P. Ioshikhes, Bryan J. Venters, Cizhong Jiang, Lynn P. Tomsho, Ji Qi, Stephan C. Schuster, Istvan Albert, B. Franklin Pugh, 2008, Genome Research on p. 1073-1083

Microbiome remodelling leads to inhibition of intestinal farnesoid X receptor signalling and decreased obesity

Fei Li, Changtao Jiang, Kristopher W. Krausz, Yunfei Li, Istvan Albert, Haiping Hao, Kristin M. Fabre, James B. Mitchell, Andrew D. Patterson, Frank J. Gonzalez, 2013, Nature Communications

Intestinal farnesoid X receptor signaling promotes nonalcoholic fatty liver disease

Changtao Jiang, Cen Xie, Fei Li, Limin Zhang, Robert G. Nichols, Kristopher W. Krausz, Jingwei Cai, Yunpeng Qi, Zhong Ze Fang, Shogo Takahashi, Naoki Tanaka, Dhimant Desai, Shantu G. Amin, Istvan Albert, Andrew D. Patterson, Frank J. Gonzalez, 2015, Journal of Clinical Investigation on p. 386-402

Boolean network simulations for life scientists

István Albert, Juilee Thakar, Song Li, Ranran Zhang, Réka Albert, 2008, Source Code for Biology and Medicine

Attractor analysis of asynchronous Boolean models of signal transduction networks

Assieh Saadatpour, István Albert, Réka Albert, 2010, Journal of Theoretical Biology on p. 641-656

Dynamical and structural analysis of a t cell survival network identifies novel candidate therapeutic targets for large granular lymphocyte leukemia

Assieh Saadatpour, Rui Sheng Wang, Aijun Liao, Xin Liu, Thomas P. Loughran, István Albert, Réka Albert, 2011, PLoS Computational Biology

Persistent organic pollutants modify gut microbiota–host metabolic homeostasis in mice through aryl hydrocarbon receptor activation

Limin Zhang, Robert G. Nichols, Jared Correll, Iain A. Murray, Naoki Tanaka, Philip B. Smith, Troy D. Hubbard, Aswathy Sebastian, Istvan Albert, Emmanuel Hatzakis, Frank J. Gonzalez, Gary H. Perdew, Andrew D. Patterson, 2015, Environmental Health Perspectives on p. 679-688

GeneTrack - A genomic data processing and visualization framework

Istvan Albert, Shinichiro Wachi, Cizhong Jiang, B. Franklin Pugh, 2008, Bioinformatics on p. 1305-1306

BioStar

Laurence D. Parnell, Pierre Lindenbaum, Khader Shameer, Giovanni Marco Dall'Olio, Daniel C. Swan, Lars Juhl Jensen, Simon J. Cockell, Brent S. Pedersen, Mary E. Mangan, Christopher A. Miller, Istvan Albert, 2011, PLoS Computational Biology