Costas Maranas

Donald B. Broughton Professor of Chemical Engineering

Costas Maranas

Research Summary

Computational studies of metabolism and gene regulation.

Huck Graduate Students

Huck Affiliations

Links

Publication Tags

Escherichia Coli Metabolic Fluxes Genome Metabolism Biomass Metabolites Genes Enzymes Kinetics Fatty Acids Metabolic Networks And Pathways Metabolite Ethanol Uncertainty Strain Pharmacological Metabolism Clostridium Thermocellum Metabolic Engineering Glucose Enzyme Kinetics Genomics Reaction Yield Application Pyrophosphatases

Most Recent Publications

J. Carl Schultz, Shekhar Mishra, Emily Gaither, Andrea Mejia, Hoang Dinh, Costas Maranas, Huimin Zhao, 2022, Microbial Cell Factories

ML helps predict enzyme turnover rates

Veda Sheersh Boorla, Vikas Upadhyay, Costas D. Maranas, 2022, Nature Catalysis on p. 655-657

Abhinay Gontu, Erika A. Marlin, Santhamani Ramasamy, Sabarinath Neerukonda, Gayatri Anil, Jasmine Morgan, Meysoon Quraishi, Chen Chen, Veda Sheersh Boorla, Ruth H. Nissly, Padmaja Jakka, Shubhada K. Chothe, Abirami Ravichandran, Nishitha Kodali, Saranya Amirthalingam, Lindsey Labella, Kathleen Kelly, Pazhanivel Natesan, Allen M. Minns, Randall M. Rossi, Jacob Robert Werner, Ernest Hovingh, Scott E. Lindner, Deepanker Tewari, Vivek Kapur, Kurt Vandegrift, Costas D. Maranas, Meera Surendran Nair, Suresh V. Kuchipudi, 2022, Viruses

Chunliu Zhuo, Xin Wang, Maite Docampo-Palacios, Brian C. Sanders, Nancy L. Engle, Timothy J. Tschaplinski, John I. Hendry, Costas D. Maranas, Fang Chen, Richard A. Dixon, 2022, Science advances

Lee R. Lynd, Gregg T. Beckham, Adam M. Guss, Lahiru N. Jayakody, Eric M. Karp, Costas Maranas, Robert L. McCormick, Daniel Amador-Noguez, Yannick J. Bomble, Brian H. Davison, Charles Foster, Michael E. Himmel, Evert K. Holwerda, Mark S. Laser, Chiam Yu Ng, Daniel G. Olson, Yuriy Román-Leshkov, Cong T. Trinh, Gerald A. Tuskan, Vikas Upadhayay, Derek R. Vardon, Lin Wang, Charles E. Wyman, 2022, Energy and Environmental Science on p. 938-990

Suresh V. Kuchipudi, Meera Surendran-Nair, Rachel M. Ruden, Michele Yon, Ruth H. Nissly, Kurt J. Vandegrift, Rahul K. Nelli, Lingling Li, Bhushan M. Jayarao, Costas D. Maranas, Nicole Levine, Katriina Willgert, Andrew J.K. Conlan, Randall J. Olsen, James J. Davis, James M. Musser, Peter John Hudson, Vivek Kapur, 2022, Proceedings of the National Academy of Sciences of the United States of America

Teun Kuil, Shuen Hon, Johannes Yayo, Charles Foster, Giulia Ravagnan, Costas D. Maranas, Lee R. Lynd, Daniel G. Olson, Antonius J.A. van Maris, 2022, Applied and Environmental Microbiology

Hoang V. Dinh, Debolina Sarkar, Costas D. Maranas, 2022, Metabolic Engineering on p. 26-39

Niaz Chowdhury, Wheaton Schroeder, Debolina Sarkar, Nardjis Amiour, Isabelle Quillere, Bertrand Hirel, Costas Maranas, Rajib Saha, 2022, JOURNAL OF EXPERIMENTAL BOTANY on p. 275-291

Charles Foster, Veda Sheersh Boorla, Satyakam Dash, Saratram Gopalakrishnan, Tyler B. Jacobson, Daniel G. Olson, Daniel Amador-Noguez, Lee R. Lynd, Costas D. Maranas, 2022, Metabolic Engineering on p. 286-301

Most-Cited Papers

Laurent Heirendt, Sylvain Arreckx, Thomas Pfau, Sebastián N. Mendoza, Anne Richelle, Almut Heinken, Hulda S. Haraldsdóttir, Jacek Wachowiak, Sarah M. Keating, Vanja Vlasov, Stefania Magnusdóttir, Chiam Yu Ng, German Preciat, Alise Žagare, Siu H.J. Chan, Maike K. Aurich, Catherine M. Clancy, Jennifer Modamio, John T. Sauls, Alberto Noronha, Aarash Bordbar, Benjamin Cousins, Diana C. El Assal, Luis V. Valcarcel, Iñigo Apaolaza, Susan Ghaderi, Masoud Ahookhosh, Marouen Ben Guebila, Andrejs Kostromins, Nicolas Sompairac, Hoai M. Le, Ding Ma, Yuekai Sun, Lin Wang, James T. Yurkovich, Miguel A.P. Oliveira, Phan T. Vuong, Lemmer P. El Assal, Inna Kuperstein, Andrei Zinovyev, H. Scott Hinton, William A. Bryant, Francisco J. Aragón Artacho, Francisco J. Planes, Egils Stalidzans, Alejandro Maass, Santosh Vempala, Michael Hucka, Michael A. Saunders, Costas D. Maranas, Nathan E. Lewis, Thomas Sauter, Bernhard Palsson, Ines Thiele, Ronan M.T. Fleming, 2019, Nature Protocols on p. 639-702

Ali R. Zomorrodi, Costas D. Maranas, 2012, PLoS Computational Biology on p. e1002363

Bertram M. Berla, Rajib Saha, Cheryl M. Immethun, Costas D. Maranas, Tae Seok Moon, Himadri B. Pakrasi, 2013, Frontiers in Microbiology

D-OptCom

Ali R. Zomorrodi, Mohammad Mazharul Islam, Costas D. Maranas, 2014, ACS Synthetic Biology on p. 247-257

A kinetic model of Escherichia coli core metabolism satisfying multiple sets of mutant flux data

Ali Khodayari, Ali R. Zomorrodi, James C. Liao, Costas D. Maranas, 2014, Metabolic Engineering on p. 50-62

Chiam Yu Ng, Iman Farasat, Costas D. Maranas, Howard M. Salis, 2015, Metabolic Engineering on p. 86-96

Mathematical optimization applications in metabolic networks

Ali R. Zomorrodi, Patrick F. Suthers, Sridhar Ranganathan, Costas D. Maranas, 2012, Metabolic Engineering on p. 672-686

Akhil Kumar, Patrick F. Suthers, Costas D. Maranas, 2012, BMC Bioinformatics

An integrated computational and experimental study for overproducing fatty acids in Escherichia coli

Sridhar Ranganathan, Ting Wei Tee, Anupam Chowdhury, Ali R. Zomorrodi, Jong Moon Yoon, Yanfen Fu, Jacqueline V. Shanks, Costas D. Maranas, 2012, Metabolic Engineering on p. 687-704