Cooduvalli Shashikant

Former Chair, Intercollege Graduate Degree Program in Bioinformatics and Genomics

Cooduvalli Shashikant

Research Summary

Developmental and evolutionary aspects of regulation of patterning genes.

Links

Publication Tags

Genes Gene Expression Milk Gene Reporter Genes Embryonic Structures Dna Mice Binding Sites Genome Vertebrates Mutation Transgenic Mice Exome Testis Population Cell Count Organisms Prostate Green Fluorescent Proteins Yeasts Datasets Stem Cells Embryonic Development Cows

Most Recent Papers

Novel metrics to measure coverage in whole exome sequencing datasets reveal local and global non-uniformity

Qingyu Wang, Cooduvalli S. Shashikant, Matthew Jensen, Naomi S. Altman, Santhosh Girirajan, 2017, Scientific reports

Functional and molecular features of the Id4<sup>+</sup> germline stem cell population in mouse testes

Frieda Chan, Melissa J. Oatley, Amy V. Kaucher, Qi En Yang, Charles J. Bieberich, Cooduvalli S. Shashikant, Jon M. Oatley, 2014, Genes and Development on p. 1351-1362

Presence of viral and bacterial organisms in milk and their association with somatic cell counts

D. A. Herlekar, Cooduvalli S. Shashikant, A. A. Gurjar, Bhushan M. Jayarao, 2013, Journal of dairy science on p. 6336-6346

Cdx1 is essential for the initiation of HoxC8 expression during early embryogenesis

Rachel Ben Haroush Schyr, Yehuda Shabtai, Cooduvalli S. Shashikant, Abraham Fainsod, 2012, FASEB Journal on p. 2674-2684

A FOXA1-binding enhancer regulates Hoxb13 expression in the prostate gland

Ryan P. McMullin, Albert Dobi, Laura N. Mutton, András Orosz, Shilpi Maheshwari, Cooduvalli S. Shashikant, Charles J. Bieberich, 2010, Proceedings of the National Academy of Sciences of the United States of America on p. 98-103

A yeast-based recombinogenic targeting toolset for transgenic analysis of human disease genes

Kevin L. Bentley, Cooduvalli S. Shashikant, Wayne Wang, Nancy H. Ruddle, Frank H. Ruddle, 2010, Annals of the New York Academy of Sciences on p. E58-E68

Evidence for positive and negative regulation of the mouse Cdx2 gene

Wayne C.H. Wang, Cooduvalli S. Shashikant, 2007, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution on p. 308-321

Comparison of diverged Hoxc8 early enhancer activities reveals modification of regulatory interactions at conserved cis-acting elements

Cooduvalli S. Shashikant, Stacey A. Bolanowsky, Sanjay Anand, Shawn M. Anderson, 2007, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution on p. 242-249

Transcriptional regulation of human MAP2 gene in melanoma

Kumar M.R. Bhat, Nityanand Maddodi, Cooduvalli Shashikant, Vijayasaradhi Setaluri, 2006, Nucleic acids research on p. 3819-3832

Hoxc8 early enhancer of the Indonesian coelacanth, Latimeria menadoensis

Cooduvalli S. Shashikant, Stacey A. Bolanowski, Joshua Danke, Chris T. Amemiya, 2004, Journal of Experimental Zoology Part B: Molecular and Developmental Evolution on p. 557-563

Most-Cited Papers

Functional and molecular features of the Id4<sup>+</sup> germline stem cell population in mouse testes

Frieda Chan, Melissa J. Oatley, Amy V. Kaucher, Qi En Yang, Charles J. Bieberich, Cooduvalli S. Shashikant, Jon M. Oatley, 2014, Genes and Development on p. 1351-1362

A FOXA1-binding enhancer regulates Hoxb13 expression in the prostate gland

Ryan P. McMullin, Albert Dobi, Laura N. Mutton, András Orosz, Shilpi Maheshwari, Cooduvalli S. Shashikant, Charles J. Bieberich, 2010, Proceedings of the National Academy of Sciences of the United States of America on p. 98-103

Novel metrics to measure coverage in whole exome sequencing datasets reveal local and global non-uniformity

Qingyu Wang, Cooduvalli S. Shashikant, Matthew Jensen, Naomi S. Altman, Santhosh Girirajan, 2017, Scientific reports

Cdx1 is essential for the initiation of HoxC8 expression during early embryogenesis

Rachel Ben Haroush Schyr, Yehuda Shabtai, Cooduvalli S. Shashikant, Abraham Fainsod, 2012, FASEB Journal on p. 2674-2684

Presence of viral and bacterial organisms in milk and their association with somatic cell counts

D. A. Herlekar, Cooduvalli S. Shashikant, A. A. Gurjar, Bhushan M. Jayarao, 2013, Journal of dairy science on p. 6336-6346

A yeast-based recombinogenic targeting toolset for transgenic analysis of human disease genes

Kevin L. Bentley, Cooduvalli S. Shashikant, Wayne Wang, Nancy H. Ruddle, Frank H. Ruddle, 2010, Annals of the New York Academy of Sciences on p. E58-E68