Emily Davenport

Assistant Professor of Biology

Emily Davenport

Research Summary

Understanding the complex relationship humans have with our microbiomes, using high-throughput sequencing technologies and novel computational and statistical techniques.

Huck Graduate Students

Huck Affiliations

Links

Most Recent Publications

Clade-specific long-read sequencing increases the accuracy and specificity of the gyrB phylogenetic marker gene

R Nichols, Emily Davenport, mSystems

Erica Ryu, Yoshina Gautam, Diana Proctor, Dinesh Bhandari, Sarmila Tandukar, Meera Gupta, Guru Gautam, David Relman, Ahmed Shibl, Jeevan Sherchand, Aashish Jha, Emily Davenport, 2024, Microbiome

Bineyam Taye, Zeleke Mekonnen, Kenneth Belanger, Emily Davenport, 2024, PLOS Neglected Tropical Diseases on p. e0012485

R Nichols, Bipin Rimal, F Hao, J Peters, Emily Davenport, A Patterson, 2024, Environment International on p. 109022

What tool or method do you wish existed?

Yvonne Chen, Charles Evavold, Matthias Mann, Emily Davenport, Margaret McFall-Ngai, Magda Bienko, Hiroki Ueda, Lin Tian, Nikki Tjahjono, Polina Anikeeva, Jun-Jie Liu, Tara Deans, Xiaohua Shen, 2024, Cell on p. 4433-4438

Abigail S. Gancz, Andrew G. Farrer, Michelle P. Nixon, Sterling Wright, Luis Arriola, Christina Adler, Emily R. Davenport, Neville Gully, Alan Cooper, Kate Britton, Keith Dobney, Justin D. Silverman, Laura S. Weyrich, 2023, Nature Microbiology on p. 2315-2325

Julia M. Kelliher, Marisa Rudolph, Pajau Vangay, Arwa Abbas, Mikayla A. Borton, Emily R. Davenport, Karen W. Davenport, Natalia G. Erazo, Chloe Herman, Lisa Karstens, Brandon Kocurek, Holly L. Lutz, Kevin S. Myers, Ingrid Ockert, Francisca E. Rodriguez, Camille Santistevan, Jaclyn K. Saunders, Montana L. Smith, Emily Vogtmann, Amanda Windsor, Elisha M. Wood-Charlson, Lou Woodley, Emiley A. Eloe-Fadrosh, 2023, Nature Microbiology on p. 751-753

Erica P. Ryu, Emily R. Davenport, 2022, Annual Review of Animal Biosciences on p. 203-226

Katherine R. Amato, Marie Claire Arrieta, Meghan B. Azad, Michael T. Bailey, Josiane L. Broussard, Carlijn E. Bruggeling, Erika C. Claud, Elizabeth K. Costello, Emily R. Davenport, Bas E. Dutilh, Holly A. Swain Ewald, Paul Ewald, Erin C. Hanlon, Wrenetha Julion, Ali Keshavarzian, Corinne F. Maurice, Gregory E. Miller, Geoffrey A. Preidis, Laure Segurel, Burton Singer, Sathish Subramanian, Liping Zhao, Christopher W. Kuzawa, 2021, Proceedings of the National Academy of Sciences of the United States of America

Andrew R. Marderstein, Emily R. Davenport, Scott Kulm, Cristopher V. Van Hout, Olivier Elemento, Andrew G. Clark, 2021, American Journal of Human Genetics on p. 49-67

Most-Cited Papers

Julia K. Goodrich, Emily R. Davenport, Michelle Beaumont, Matthew A. Jackson, Rob Knight, Carole Ober, Tim D. Spector, Jordana T. Bell, Andrew G. Clark, Ruth E. Ley, 2016, Cell Host and Microbe on p. 731-743

Emily R. Davenport, Jon G. Sanders, Se Jin Song, Katherine R. Amato, Andrew G. Clark, Rob Knight, 2017, BMC Biology

Emily R. Davenport, Orna Mizrahi-Man, Katelyn Michelini, Luis B. Barreiro, Carole Ober, Yoav Gilad, 2014, PLoS One on p. e90731

Julia K. Goodrich, Emily R. Davenport, Andrew G. Clark, Ruth E. Ley, 2017, Annual Review of Genetics on p. 413-433

Julia K. Goodrich, Emily R. Davenport, Jillian L. Waters, Andrew G. Clark, Ruth E. Ley, 2016, Science on p. 532-535

Emily R. Davenport, Darren A. Cusanovich, Katelyn Michelini, Luis B. Barreiro, Carole Ober, Yoav Gilad, 2015, PLoS One on p. e0140301

Michelle Beaumont, Julia K. Goodrich, Matthew A. Jackson, Idil Yet, Emily R. Davenport, Sara Vieira-Silva, Justine Debelius, Tess Pallister, Massimo Mangino, Jeroen Raes, Rob Knight, Andrew G. Clark, Ruth E. Ley, Tim D. Spector, Jordana T. Bell, 2016, Genome Biology on p. 189

Aashish R. Jha, Emily R. Davenport, Yoshina Gautam, Dinesh Bhandari, Sarmila Tandukar, Katharine M. Ng, Gabriela K. Fragiadakis, Susan Holmes, Guru Prasad Gautam, Jeff Leach, Jeevan Bahadur Sherchand, Carlos D. Bustamante, Justin L. Sonnenburg, 2018, PLoS Biology on p. e2005396

John D. Blischak, Emily R. Davenport, Greg Wilson, 2016, PLoS Computational Biology on p. e1004668

Katherine R. Amato, Marie Claire Arrieta, Meghan B. Azad, Michael T. Bailey, Josiane L. Broussard, Carlijn E. Bruggeling, Erika C. Claud, Elizabeth K. Costello, Emily R. Davenport, Bas E. Dutilh, Holly A. Swain Ewald, Paul Ewald, Erin C. Hanlon, Wrenetha Julion, Ali Keshavarzian, Corinne F. Maurice, Gregory E. Miller, Geoffrey A. Preidis, Laure Segurel, Burton Singer, Sathish Subramanian, Liping Zhao, Christopher W. Kuzawa, 2021, Proceedings of the National Academy of Sciences of the United States of America