Glucuronidation metabolomic fingerprinting to map host-microbe metabolism
Nina R. Boyle, Josh J. Sekela, Mingxun Wang, Helena Mannochio-Russo, Jeong Joo Pyo, Min Soo Kim, Shuchang Tian, Imhoi Koo, Elliot S. Friedman, Ceylan Tanes, Mallappa Anitha, Yuan Tian, Ethan W. Morgan, Iain A. Murray, Joseph P. Zackular, Kyle Bittinger, James D. Lewis, Gary H. Perdew, Gary D. Wu, Ba...,
Dec 2026,
In: Nature communications
Date: Dec 2026
Core-shell commensal biocapsules for in situ gut microbiome engineering
Lily Foley, Sonika Kohli, Shuchang Tian, Logan C. Eisaman, Harshita Ganga, Gabrielle Hamner, Matthew R. Aronson, Jordan E. Bisanz, Scott H. Medina,
Nov 2026,
In: Bioactive Materials
Date: Nov 2026
Tracing NAD<sup>+</sup> metabolism uncovers adaptive coordination between host and microbiome during colitis
Abrar I. Alsaadi, Lina Wehkamp, Anant A. Pothakamury, Mahmoud S. Yahia, Praveena Prasad, Clara Gilloteau, Jaedon Sadler, Jaclyn D. Smith, Brenita C. Jenkins, Garret S. Diven, Johanna Bornhäuser, Taous Mekdoud, Shuchang Tian, Philip Rosenstiel, Stefan Schreiber, Jordan E. Bisanz, Konrad Aden, Melani...,
Aug 25 2026,
In: Cell Reports
Date: Aug 25 2026
STING agonist protects against exacerbation of schistosome egg-induced immunopathology
Pengyu Liu, Megan S. Linnane, Kaile Jump, Shuchang Tian, Santoshi Chaudhary, Rajeswaran Mani, Jordan E. Bisanz, Parisa Kalantari,
Jul 2026,
In: PLoS pathogens
Date: Jul 2026
Multi-cohort comparative analysis of salivary microbiotas reveals rural Ethiopians harbor a distinct composition correlated with lower esophageal cancer prevalence
Girma Mulisa, Jingcheng Zhao, Geda Lelissa, Iyunoluwa J. Ademola-Popoola, Anastacia Marie Diaz Huemme, Laura S. Weyrich, Adane Mihret, Tufa Gemechu, Abate Bane, Roger Pero-Gascon, Marthe De Boevre, Sarah De Saeger, Tamrat Abebe, Jordan E. Bisanz,
Jun 2026,
In: mSystems
Date: Jun 2026
Immune-microbiome coordination defines interferon setpoints in healthy humans
Joel Babdor, Ravi K. Patel, Brittany Davidson, Kelvin Koser, Cecilia Noecker, Maha K. Rahim, Jordan E. Bisanz, Iliana Tenvooren, Diana Marquez, Maria Calvo, Vrinda Johri, Elizabeth E. McCarthy, Avneet Shaheed, Christina Ekstrand, Allison M. Weakley, Feiqiao B. Yu, Kristen Krip, Kashif A. Shaikh, Haj...,
May 14 2026,
In: Cell
Date: May 14 2026
A synthetic gut microbiota provides an understanding of the maintenance and functional impact of phage
Heejung Koo, Kerim Heber, Shuchang Tian, Shane T. Connolly, Fuhua Hao, Jingcheng Zhao, Bethany Swencki-Underwood, Andrew D. Patterson, Guy E. Townsend, Jordan E. Bisanz,
Dec 2025,
In: mBio
Date: Dec 2025
STREAMS guidelines
Julia M. Kelliher, Chloe Mirzayi, Sarah R. Bordenstein, Aaron Oliver, Christina A. Kellogg, Eneida L. Hatcher, Maureen Berg, Petr Baldrian, Mashael Aljumaah, Cassandra Maria Luz Miller, Christopher Mungall, Vlastimil Novak, Alexis Palucki, Ethan Smith, Nazifa Tabassum, Gregory Bonito, J. Rodney Bris...,
Dec 2025,
In: Nature Microbiology
Date: Dec 2025
Effect of Varying Quantities of Lean Beef as Part of a Mediterranean-Style Dietary Pattern on Gut Microbiota and Plasma, Fecal, and Urinary Metabolites
Zachary S. DiMattia, Jingcheng Zhao, Fuhua Hao, Sergei Koshkin, Jordan E. Bisanz, Andrew D. Patterson, Jennifer A. Fleming, Penny M. Kris-Etherton, Kristina S. Petersen,
Sep 19 2025,
In: Journal of the American Heart Association
Date: Sep 19 2025
StrainR2 accurately deconvolutes strain-level abundances in synthetic microbial communities
Kerim Heber, Shuchang Tian, Daniela Betancurt-Anzola, Heejung Koo, Jordan E. Bisanz,
Aug 1 2025,
In: Bioinformatics
Date: Aug 1 2025
Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al-Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J. Brislawn, C. Titus Brown, Benjamin J. Calla...,
Aug 1 2019,
In: Nature Biotechnology
Citations: 19,534
Bile acids and the gut microbiota
Stephanie L. Collins, Jonathan G. Stine, Jordan E. Bisanz, C. Denise Okafor, Andrew David Patterson,
2022,
In: Nature Reviews Microbiology
Citations: 1,039
Author Correction
Evan Bolyen, Jai Ram Rideout, Matthew R. Dillon, Nicholas A. Bokulich, Christian C. Abnet, Gabriel A. Al-Ghalith, Harriet Alexander, Eric J. Alm, Manimozhiyan Arumugam, Francesco Asnicar, Yang Bai, Jordan E. Bisanz, Kyle Bittinger, Asker Brejnrod, Colin J. Brislawn, C. Titus Brown, Benjamin J. Calla...,
Sep 1 2019,
In: Nature Biotechnology
Citations: 693
Discovery and inhibition of an interspecies gut bacterial pathway for Levodopa metabolism
Vayu Maini Rekdal, Elizabeth N. Bess, Jordan E. Bisanz, Peter J. Turnbaugh, Emily P. Balskus,
Jun 14 2019,
In: Science
Citations: 676
Human gut bacteria produce Τ<sub>Η</sub>17-modulating bile acid metabolites
Donggi Paik, Lina Yao, Yancong Zhang, Sena Bae, Gabriel D. D’Agostino, Minghao Zhang, Eunha Kim, Eric A. Franzosa, Julian Avila-Pacheco, Jordan E. Bisanz, Christopher K. Rakowski, Hera Vlamakis, Ramnik J. Xavier, Peter J. Turnbaugh, Randy S. Longman, Michael R. Krout, Clary B. Clish, Fraydoon Rast...,
2022,
In: Nature
Citations: 521
Reporting guidelines for human microbiome research
Chloe Mirzayi, Audrey Renson, Cesare Furlanello, Susanna Assunta Sansone, Fatima Zohra, Shaimaa Elsafoury, Ludwig Geistlinger, Lora J. Kasselman, Kelly Eckenrode, Janneke van de Wijgert, Amy Loughman, Francine Z. Marques, David A. MacIntyre, Manimozhiyan Arumugam, Rimsha Azhar, Francesco Beghini, Ki...,
Nov 2021,
In: Nature Medicine
Citations: 412
Meta-Analysis Reveals Reproducible Gut Microbiome Alterations in Response to a High-Fat Diet
Jordan E. Bisanz, Vaibhav Upadhyay, Jessie A. Turnbaugh, Kimberly Ly, Peter J. Turnbaugh,
Aug 14 2019,
In: Cell Host and Microbe
Citations: 292
Gut microbiota–specific iga<sup>+</sup> B cells traffic to the CNS in active multiple sclerosis
Anne Katrin Pröbstel, Xiaoyuan Zhou, Ryan Baumann, Sven Wischnewski, Michael Kutza, Olga L. Rojas, Katrin Sellrie, Antje Bischof, Kicheol Kim, Akshaya Ramesh, Ravi Dandekar, Ariele L. Greenfield, Ryan D. Schubert, Jordan E. Bisanz, Stephanie Vistnes, Khashayar Khaleghi, James Landefeld, Gina Kirkis...,
Nov 20 2020,
In: Science Immunology
Citations: 203
Bile salt hydrolase catalyses formation of amine-conjugated bile acids
Bipin Rimal, Stephanie L. Collins, Ceylan E. Tanes, Edson R. Rocha, Megan A. Granda, Sumeet Solanki, Nushrat J. Hoque, Emily C. Gentry, Imhoi Koo, Erin R. Reilly, Fuhua Hao, Devendra Paudel, Vishal Singh, Tingting Yan, Min Soo Kim, Kyle Bittinger, Joseph P. Zackular, Kristopher W. Krausz, Dhimant De...,
Feb 22 2024,
In: Nature
Citations: 190
Randomized Open-Label pilot study of the influence of probiotics and the gut microbiome on toxic metal levels in Tanzanian pregnant women and school children
Jordan E. Bisanz, Megan K. Enos, Joseph R. Mwanga, John Changalucha, Jeremy P. Burton, Gregory B. Gloor, Gregor Reid,
Oct 7 2014,
In: mBio
Citations: 189
