epDevAtlas
Josephine K. Liwang, Fae N. Kronman, Hyun Jae Pi, Yuan Ting Wu, Daniel J. Vanselow, Steffy B. Manjila, Deniz Parmaksiz, Donghui Shin, Yoav Ben-Simon, Michael Taormina, Sharon W. Way, Hongkui Zeng, Bosiljka Tasic, Lydia Ng, Yongsoo Kim,
Dec 2025,
In: Nature communications
Date: Dec 2025
Dendritome mapping reveals the spatial organization of striatal neuron morphology
Chang Sin Park, Ming Yan, Muye Zhu, Masood A. Akram, Nicholas N. Foster, Andrew Bennecke, Christopher Choi, Karl Marrett, Keivan Moradi, Jason Y. Zhang, Gabrielle Magat, Sumit Nanda, Raymond Vaca, Kathleen Wijaya, Jedrick Regala Zablan, Sebastian Lee, Cassidy Song, Mary Jasmine Lara, Madeline Louie,...,
Dec 2025,
In: Nature Neuroscience
Date: Dec 2025
The ANTsX ecosystem for mapping the mouse brain
Nicholas J. Tustison, Min Chen, Fae N. Kronman, Jeffrey T. Duda, Clare Gamlin, Mia G. Tustison, Michael Kunst, Rachel Dalley, Staci Sorenson, Quanxin Wang, Lydia Ng, Yongsoo Kim, James C. Gee,
Dec 2025,
In: Nature communications
Date: Dec 2025
The new frontier in understanding human and mammalian brain development
Tomasz J. Nowakowski, Patricia R. Nano, Katherine S. Matho, Xiaoyin Chen, Emily K. Corrigan, Wubin Ding, Yuan Gao, Matthew Heffel, Jaikishan Jayakumar, Harris S. Kaplan, Fae N. Kronman, Rothem Kovner, Camiel C.A. Mannens, Mengyi Song, Marilyn R. Steyert, Sridevi Venkatesan, Jenelle L. Wallace, Li Wa...,
Nov 6 2025,
In: Nature
Date: Nov 6 2025
Impaired capillary–venous drainage contributes to gliosis and demyelination in mouse white matter during aging
Stefan Stamenkovic, Franca Schmid, Gokce Gurler, Farzaneh Abolmaali, Nicolas A. Weitermann, Kevin T. Takasaki, Stephanie K. Bonney, Maria J. Sosa, Hannah C. Bennett, Yongsoo Kim, Jack Waters, Andy Y. Shih,
Sep 2025,
In: Nature Neuroscience
Date: Sep 2025
Brain-wide connectivity and novelty response of the dorsal endopiriform nucleus in mice
Steffy B. Manjila, Seoyoung Son, Deniz Parmaksiz, Hannah Kline, Rebecca Betty, Yuan ting Wu, Hyun Jae Pi, Donghui Shin, Josephine K. Liwang, Fae N. Kronman, Ingvild E. Bjerke, Kyle McGovern, Justin Silverman, Anirban Paul, Yongsoo Kim,
Jul 22 2025,
In: Cell Reports
Date: Jul 22 2025
Left-Right Brain-Wide Asymmetry of Neuroanatomy in the Mouse Brain
Andrew Silberfeld, James M. Roe, Jacob Ellegood, Jason P. Lerch, Lily Qiu, Yongsoo Kim, Jong Gwan Lee, William D. Hopkins, Joanes Grandjean, Yangming Ou, Olivier Pourquié,
Feb 15 2025,
In: NeuroImage
Date: Feb 15 2025
Developmental mouse brain common coordinate framework
Fae N. Kronman, Josephine K. Liwang, Rebecca Betty, Daniel J. Vanselow, Yuan Ting Wu, Nicholas J. Tustison, Ashwin Bhandiwad, Steffy B. Manjila, Jennifer A. Minteer, Donghui Shin, Choong Heon Lee, Rohan Patil, Jeffrey T. Duda, Jian Xue, Yingxi Lin, Keith C. Cheng, Luis Puelles, James C. Gee, Jiangya...,
Dec 2024,
In: Nature communications
Date: Dec 2024
Aging drives cerebrovascular network remodeling and functional changes in the mouse brain
Hannah C. Bennett, Qingguang Zhang, Yuan Ting Wu, Steffy B. Manjila, Uree Chon, Donghui Shin, Daniel J. Vanselow, Hyun Jae Pi, Patrick J. Drew, Yongsoo Kim,
Dec 2024,
In: Nature communications
Date: Dec 2024
Cross-modality mapping using image varifolds to align tissue-scale atlases to molecular-scale measures with application to 2D brain sections
Kaitlin M. Stouffer, Alain Trouvé, Laurent Younes, Michael Kunst, Lydia Ng, Hongkui Zeng, Manjari Anant, Jean Fan, Yongsoo Kim, Xiaoyin Chen, Mara Rue, Michael I. Miller,
Dec 2024,
In: Nature communications
Date: Dec 2024
Serial two-photon tomography for automated ex vivo mouse brain imaging
Timothy Ragan, Lolahon R. Kadiri, Kannan Umadevi Venkataraju, Karsten Bahlmann, Jason Sutin, Julian Taranda, Ignacio Arganda-Carreras, Yongsoo Kim, H. Sebastian Seung, Pavel Osten,
Mar 2012,
In: Nature methods
Citations: 544
Brain-wide Maps Reveal Stereotyped Cell-Type-Based Cortical Architecture and Subcortical Sexual Dimorphism
Yongsoo Kim, Guangyu Robert Yang, Kith Pradhan, Kannan Umadevi Venkataraju, Mihail Bota, Luis Carlos García del Molino, Greg Fitzgerald, Keerthi Ram, Miao He, Jesse Maurica Levine, Partha Mitra, Z. Josh Huang, Xiao Jing Wang, Pavel Osten,
Oct 5 2017,
In: Cell
Citations: 270
Mapping social behavior-induced brain activation at cellular resolution in the mouse
Yongsoo Kim, Kannan Umadevi Venkataraju, Kith Pradhan, Carolin Mende, Julian Taranda, Srinivas C. Turaga, Ignacio Arganda-Carreras, Lydia Ng, Michael J. Hawrylycz, Kathleen S. Rockland, H. Sebastian Seung, Pavel Osten,
Jan 13 2015,
In: Cell Reports
Citations: 240
Strategies and Tools for Combinatorial Targeting of GABAergic Neurons in Mouse Cerebral Cortex
Miao He, Jason Tucciarone, Soo Hyun Lee, Maximiliano José Nigro, Yongsoo Kim, Jesse Maurica Levine, Sean Michael Kelly, Illya Krugikov, Priscilla Wu, Yang Chen, Lin Gong, Yongjie Hou, Pavel Osten, Bernardo Rudy, Z. Josh Huang,
Sep 21 2016,
In: Neuron
Citations: 214
Cellular anatomy of the mouse primary motor cortex
Rodrigo Muñoz-Castañeda, Brian Zingg, Katherine S. Matho, Xiaoyin Chen, Quanxin Wang, Nicholas N. Foster, Anan Li, Arun Narasimhan, Karla E. Hirokawa, Bingxing Huo, Samik Bannerjee, Laura Korobkova, Chris Sin Park, Young Gyun Park, Michael S. Bienkowski, Uree Chon, Diek W. Wheeler, Xiangning Li, Y...,
Oct 7 2021,
In: Nature
Citations: 166
Subset of cortical layer 6b neurons selectively innervates higher order thalamic nuclei in mice
Anna Hoerder-Suabedissen, Shuichi Hayashi, Louise Upton, Zachary Nolan, Diana Casas-Torremocha, Eleanor Grant, Sarada Viswanathan, Patrick O. Kanold, Francisco Clasca, Yongsoo Kim, Zoltán Molnár,
May 1 2018,
In: Cerebral Cortex
Citations: 121
Enhanced and unified anatomical labeling for a common mouse brain atlas
Uree Chon, Daniel J. Vanselow, Keith C. Cheng, Yongsoo Kim,
Dec 1 2019,
In: Nature communications
Citations: 106
Dynamic features of postnatal subventricular zone cell motility
Chae Nam Sang, Yongsoo Kim, Dilyan Dryanovski, Avery Walker, Gwendolyn Goings, Kevin Woolfrey, Su Kang Seong, Chris Chu, Anjen Chenn, Ferenc Erdelyi, Gabor Szabo, Philip Hockberger, Francis G. Szele,
Nov 10 2007,
In: Journal of Comparative Neurology
Citations: 101
Whole-Brain Wiring Diagram of Oxytocin System in Adult Mice
Seoyoung Son, Steffy B. Manjila, Kyra T. Newmaster, Yuan Ting Wu, Daniel J. Vanselow, Matt Ciarletta, Todd E. Anthony, Keith C. Cheng, Yongsoo Kim,
Jun 22 2022,
In: Journal of Neuroscience
Citations: 91
Quantitative cellular-resolution map of the oxytocin receptor in postnatally developing mouse brains
Kyra T. Newmaster, Zachary T. Nolan, Uree Chon, Daniel J. Vanselow, Abigael R. Weit, Manal Tabbaa, Shizu Hidema, Katsuhiko Nishimori, Elizabeth A.D. Hammock, Yongsoo Kim,
Dec 1 2020,
In: Nature communications
Citations: 88
