SC-MO-GRN-DB
Hannah Valensi, Karamveer Karamveer, Eric Moeller, Sami Eren Ozdogan, Rachael M. Edwards, Yasin Uzun,
Apr 17 2026,
In: iScience
Date: Apr 17 2026
An Epigenetic Basis for Sustained Inflammatory Epithelial Progenitor Cell States in Crohn’s Disease
Tatiana A. Karakasheva, Clara Morral Martinez, Yusen Zhou, Jingya Qui, Xinyi E. Chen, Gloria E. Soto, Shaneice K. Nettleford, Olivia T. Hix, Daana M. Roach, Alyssa M. Laguerta, Anusha Thadi, Rachael M. Edwards, Daniel Aleynick, Sarah Weinbrom, Elizaveta Borodyanskaya, Oliver H. Pickering, Mary Kate ...,
2026,
In: CMGH
Date: 2026
CK2α Deletion in the Hematopoietic Compartment Shows a Mild Alteration in Terminally Differentiated Cells and the Expansion of Stem Cells
Rajesh Rajaiah, Muhammad Daniyal, Marudhu Pandiyan Shanmugam, Hannah Valensi, Koby Duke, Katherine Mercer, Morgann Klink, Matthew Lanza, Yasin Uzun, Suming Huang, Sinisa Dovat, Chandrika Gowda Behura,
Jul 2025,
In: Cells
Date: Jul 2025
Noncoding RNA, ncRNA-a3, Epigenetically Regulates TAL1 Transcriptional Program During Erythropoiesis
Meghana Matur, Yasin Uzun, Xiangguo Shi, Karina Hamamoto, Yi Qiu, Suming Huang,
2025,
In: Molecular and cellular biology
Date: 2025
Analysis of gene regulatory networks from gene expression using graph neural networks
Hakan T. Otal, Abdulhamit Subasi, Furkan Kurt, M. Abdullah Canbaz, Yasin Uzun,
Jan 1 2025,
In: Digital Healthcare, Digital Transformation and Citizen Empowerment in Asia-Pacific and Europe for a Healthier Society
Date: Jan 1 2025
Longitudinal single-cell multiomic atlas of high-risk neuroblastoma reveals chemotherapy-induced tumor microenvironment rewiring
Wenbao Yu, Rumeysa Biyik-Sit, Yasin Uzun, Chia Hui Chen, Anusha Thadi, Jonathan H. Sussman, Minxing Pang, Chi Yun Wu, Liron D. Grossmann, Peng Gao, David W. Wu, Aliza Yousey, Mei Zhang, Christina S. Turn, Zhan Zhang, Shovik Bandyopadhyay, Jeffrey Huang, Tasleema Patel, Changya Chen, Daniel Martinez,...,
2025,
In: Nature Genetics
Date: 2025
Identification and Characterization of Chemotherapy-Resistant High-Risk Neuroblastoma Persister Cells
Liron D. Grossmann, Chia Hui Chen, Yasin Uzun, Anusha Thadi, Adam J. Wolpaw, Kevin Louault, Yael Goldstein, Lea F. Surrey, Daniel Martinez, Matteo Calafatti, Mark Gerelus, Peng Gao, Lobin Lee, Khushbu Patel, Rebecca S. Kaufman, Guy Shani, Alvin Farrel, Sharon Moshitch-Moshkovitz, Paris Grimaldi, Mat...,
Dec 1 2024,
In: Cancer Discovery
Date: Dec 1 2024
Correction Notice
Clara Morral, Reem Ghinnagow, Tatiana Karakasheva, Yusen Zhou, Anusha Thadi, Ning Li, Benjamin Yoshor, Gloria E. Soto, Chia Hui Chen, Daniel Aleynick, Sarah Weinbrom, Mary Kate Fulton, Yasin Uzun, Meenakshi Bewtra, Judith R. Kelsen, Christopher J. Lengner, Kai Tan, Andy J. Minn, Kathryn E. Hamilton,
May 5 2024,
In: Bio-protocol
Date: May 5 2024
Approaches for Benchmarking Single-Cell Gene Regulatory Network Methods
Karamveer, Yasin Uzun,
Jan 1 2024,
In: Bioinformatics and Biology Insights
Date: Jan 1 2024
Advances in computational and experimental approaches for deciphering transcriptional regulatory networks
Camille Moeckel, Ioannis Mouratidis, Nikol Chantzi, Yasin Uzun, Ilias Georgakopoulos-Soares,
2024,
In: BioEssays
Date: 2024
Integrative bulk and single-cell profiling of premanufacture t-cell populations reveals factors mediating long-term persistence of car t-cell therapy
Gregory M. Chen, Changya Chen, Rajat K. Das, Peng Gao, Chia Hui Chen, Shovik Bandyopadhyay, Yang Yang Ding, Yasin Uzun, Wenbao Yu, Qin Zhu, Regina M. Myers, Stephan A. Grupp, David M. Barrett, Kai Tan,
Sep 2021,
In: Cancer Discovery
Citations: 182
Developmental trajectory of prehematopoietic stem cell formation from endothelium
Qin Zhu, Peng Gao, Joanna Tober, Laura Bennett, Changya Chen, Yasin Uzun, Yan Li, Elizabeth D. Howell, Melanie Mumau, Wenbao Yu, Bing He, Nancy A. Speck, Kai Tan,
Aug 13 2020,
In: Blood
Citations: 130
Single-cell multiomics reveals increased plasticity, resistant populations, and stem-cell–like blasts in KMT2A-rearranged leukemia
Changya Chen, Wenbao Yu, Fatemeh Alikarami, Qi Qiu, Chia hui Chen, Jennifer Flournoy, Peng Gao, Yasin Uzun, Li Fang, James W. Davenport, Yuxuan Hu, Qin Zhu, Kai Wang, Clara Libbrecht, Alex Felmeister, Isaiah Rozich, Yang yang Ding, Stephen P. Hunger, Carolyn A. Felix, Hao Wu, Patrick A. Brown, Erin ...,
Apr 7 2022,
In: Blood
Citations: 97
MITI minimum information guidelines for highly multiplexed tissue images
Denis Schapiro, Clarence Yapp, Artem Sokolov, Sheila M. Reynolds, Yu An Chen, Damir Sudar, Yubin Xie, Jeremy Muhlich, Raquel Arias-Camison, Sarah Arena, Adam J. Taylor, Milen Nikolov, Madison Tyler, Jia Ren Lin, Erik A. Burlingame, Daniel L. Abravanel, Samuel Achilefu, Foluso O. Ademuyiwa, Andrew C....,
Mar 2022,
In: Nature methods
Citations: 53
ScATAC-pro
Wenbao Yu, Yasin Uzun, Qin Zhu, Changya Chen, Kai Tan,
Apr 20 2020,
In: Genome biology
Citations: 49
Identifying noncoding risk variants using disease-relevant gene regulatory networks
Long Gao, Yasin Uzun, Peng Gao, Bing He, Xiaoke Ma, Jiahui Wang, Shizhong Han, Kai Tan,
Dec 1 2018,
In: Nature communications
Citations: 46
Epigenetic state determines inflammatory sensing in neuroblastoma
Adam J. Wolpaw, Liron D. Grossmann, Jessica L. Dessau, May M. Dong, Bailey J. Aaron, Patricia A. Brafford, Darya Volgina, Guillem Pascual-Pasto, Alba Rodriguez-Garcia, Yasin Uzun, Marie Arsenian-Henriksson, Daniel J. Powell, Kristopher R. Bosse, Andrew Kossenkov, Kai Tan, Michael D. Hogarty, John M....,
Feb 8 2022,
In: Proceedings of the National Academy of Sciences of the United States of America
Citations: 44
Transcriptional regulatory network controlling the ontogeny of hematopoietic stem cells
Peng Gao, Changya Chen, Elizabeth D. Howell, Yan Li, Joanna Tober, Yasin Uzun, Bing He, Long Gao, Qin Zhu, Arndt F. Siekmann, Nancy A. Speck, Kai Tan,
Jul 2020,
In: Genes and Development
Citations: 42
Risk variants disrupting enhancers of T<sub>H</sub>1 and T<sub>REG</sub> cells in type 1 diabetes
Peng Gao, Yasin Uzun, Bing He, Sarah E. Salamati, Julie K.M. Coffey, Eva Tsalikian, Kai Tan,
Apr 9 2019,
In: Proceedings of the National Academy of Sciences of the United States of America
Citations: 35
Longitudinal single-cell multiomic atlas of high-risk neuroblastoma reveals chemotherapy-induced tumor microenvironment rewiring
Wenbao Yu, Rumeysa Biyik-Sit, Yasin Uzun, Chia Hui Chen, Anusha Thadi, Jonathan H. Sussman, Minxing Pang, Chi Yun Wu, Liron D. Grossmann, Peng Gao, David W. Wu, Aliza Yousey, Mei Zhang, Christina S. Turn, Zhan Zhang, Shovik Bandyopadhyay, Jeffrey Huang, Tasleema Patel, Changya Chen, Daniel Martinez,...,
2025,
In: Nature Genetics
Citations: 33
