Fecal microbial and metabolic signatures in children with very early onset inflammatory bowel disease
Kine Eide Kvitne, Simone Zuffa, Vincent Charron-Lamoureux, Ipsita Mohanty, Abubaker Patan, Helena Mannochio-Russo, Jasmine Zemlin, Lindsey A. Burnett, Lisa S. Zhang, Mia C. Cecala, Ceylan Ersoz, James A. Connelly, Natasha Halasa, Maribeth Nicholson, Pieter C. Dorrestein, Shirley M. Tsunoda, Janet Ma...,
Dec 2026,
In: npj Biofilms and Microbiomes
Date: Dec 2026
Bridging complexity and accessibility in metabolomics with MetaboApps
Helena Mannochio-Russo, Wilhan D. Gonçalves Nunes, Haoqi Nina Zhao, Kine Eide Kvitne, Shipei Xing, Harsha Gouda, Julius Agongo, Ipsita Mohanty, Vincent Charron-Lamoureux, Prajit Rajkumar, Abzer K. Pakkir Shah, Axel Walter, Rithi Krishnaraj, Yasin El Abiead, Patrick C. Ferreira, Simone Zuffa, Abubak...,
Aug 2026,
In: Nature methods
Date: Aug 2026
Systemic rhythmicity of host and bacterial bile acid amidates in the mouse
Erin R. Reilly, Vincent Charron-Lamoureux, Helena Mannochio-Russo, Ethan W. Morgan, Nina R. Boyle, Imhoi Koo, Emma Coudriet, Fuhua Hao, Ipsita Mohanty, Gary H. Perdew, Pieter C. Dorrestein, Andrew D. Patterson,
Apr 15 2026,
In: Cell Systems
Date: Apr 15 2026
MS/MS Mass Spectrometry Filtering Tree for Bile Acid Regio- and Stereoisomer Annotation
Ipsita Mohanty, Shipei Xing, Vanessa Castillo, Julius Agongo, Abubaker Patan, Yasin El Abiead, Helena Mannochio-Russo, Wilhan D. Gonçalves Nunes, Jasmine Zemlin, Itzhak Mizrahi, Dionicio Siegel, Mingxun Wang, Lee R. Hagey, Pieter C. Dorrestein,
Feb 17 2026,
In: Analytical Chemistry
Date: Feb 17 2026
A metabolic atlas of mouse aging
Steven E. Pilley, Dominik Awad, Djakim Latumalea, Connie New, Edgar Esparza, Shuo Wang, Xuanyi Shi, Li Zhang, Maximilian Unfried, Jasinda H. Lee, Ernst Schmid, Ipsita Mohanty, Jenna L.E. Blum, Shivaanishaa Raventhiran, Esther Wong, Preeti R. Iyengar, Racheal Mulondo, Sriraksha Bharadwaj Kashyap, Dar...,
Feb 3 2026,
In: Cell Metabolism
Date: Feb 3 2026
Perinatal ampicillin exposure alters murine maternal fecal bile acid and acylcarnitine profiles
Simone Zuffa, Sydney P. Thomas, Abubaker Patan, Ipsita Mohanty, Yasin El Abiead, Victoria Deleray, Kine Eide Kvitne, Armin Kousha, Emi Suzuki, Chih Ming Tsai, Griffith Nguyen, Benjamin Ho, George Y. Liu, Victor Nizet, Pieter C. Dorrestein, Fatemeh Askarian, Shirley M. Tsunoda,
2026,
In: Gut microbes
Date: 2026
A Perspective on Unintentional Fragments and Their Impact on the Dark Metabolome, Untargeted Profiling, Molecular Networking, Public Data, and Repository Scale Analysis
Yasin El Abiead, Ipsita Mohanty, Shipei Xing, Adriano Rutz, Vincent Charron-Lamoureux, Tito Damiani, Wenyun Lu, Gary J. Patti, Nicola Zamboni, Oscar Yanes, Pieter C. Dorrestein,
Dec 22 2025,
In: JACS Au
Date: Dec 22 2025
Environmental and maternal imprints on infant gut metabolic development
Kine Eide Kvitne, Celeste Allaband, Jennifer C. Onuora, Daniela Perry, Simone Zuffa, Lucas Patel, Vincent Charron-Lamoureux, Ipsita Mohanty, Kristija Sejane, Abubaker Patan, Abdullah Al Mahmud, Tahmeed Ahmed, Diego G. Bassani, Antonio González, Davidson H. Hamer, Rashidul Haque, Benjamin Ho, Md Iqb...,
Dec 10 2025,
In: Cell Host and Microbe
Date: Dec 10 2025
Enabling pan-repository reanalysis for big data science of public metabolomics data
Yasin El Abiead, Michael Strobel, Thomas Payne, Eoin Fahy, Claire O’Donovan, Shankar Subramamiam, Juan Antonio Vizcaíno, Ozgur Yurekten, Victoria Deleray, Simone Zuffa, Shipei Xing, Helena Mannochio-Russo, Ipsita Mohanty, Haoqi Nina Zhao, Andres M. Caraballo-Rodriguez, Paulo Wender Paulo, Nicole ...,
Dec 2025,
In: Nature communications
Date: Dec 2025
A resource to empirically establish drug exposure records directly from untargeted metabolomics data
Haoqi Nina Zhao, Kine Eide Kvitne, Corinna Brungs, Siddharth Mohan, Vincent Charron-Lamoureux, Wout Bittremieux, Runbang Tang, Robin Schmid, Santosh Lamichhane, Shipei Xing, Yasin El Abiead, Mohammadsobhan S. Andalibi, Helena Mannochio-Russo, Madison Ambre, Nicole E. Avalon, MacKenzie Bryant, Lindse...,
Dec 2025,
In: Nature communications
Date: Dec 2025
The changing metabolic landscape of bile acids – keys to metabolism and immune regulation
Ipsita Mohanty, Celeste Allaband, Helena Mannochio-Russo, Yasin El Abiead, Lee R. Hagey, Rob Knight, Pieter C. Dorrestein,
Jul 2024,
In: Nature Reviews Gastroenterology and Hepatology
Citations: 171
How bile acids and the microbiota interact to shape host immunity
Michael H. Lee, Sean Paul Nuccio, Ipsita Mohanty, Lee R. Hagey, Pieter C. Dorrestein, Hiutung Chu, Manuela Raffatellu,
Nov 2024,
In: Nature Reviews Immunology
Citations: 108
An Obligate Peptidyl Brominase Underlies the Discovery of Highly Distributed Biosynthetic Gene Clusters in Marine Sponge Microbiomes
Nguyet A. Nguyen, Zhenjian Lin, Ipsita Mohanty, Neha Garg, Eric W. Schmidt, Vinayak Agarwal,
Jul 14 2021,
In: Journal of the American Chemical Society
Citations: 39
Multi-omic profiling of melophlus sponges reveals diverse metabolomic and microbiome architectures that are non-overlapping with ecological neighbors
Ipsita Mohanty, Sheila Podell, Jason S. Biggs, Neha Garg, Eric E. Allen, Vinayak Agarwal,
2020,
In: Marine Drugs
Citations: 26
Enabling pan-repository reanalysis for big data science of public metabolomics data
Yasin El Abiead, Michael Strobel, Thomas Payne, Eoin Fahy, Claire O’Donovan, Shankar Subramamiam, Juan Antonio Vizcaíno, Ozgur Yurekten, Victoria Deleray, Simone Zuffa, Shipei Xing, Helena Mannochio-Russo, Ipsita Mohanty, Haoqi Nina Zhao, Andres M. Caraballo-Rodriguez, Paulo Wender Paulo, Nicole ...,
Dec 2025,
In: Nature communications
Citations: 25
The microbiome diversifies long- to short-chain fatty acid-derived N-acyl lipids
Helena Mannochio-Russo, Vincent Charron-Lamoureux, Martijn van Faassen, Santosh Lamichhane, Wilhan D. Gonçalves Nunes, Victoria Deleray, Adriana V. Ayala, Yuichiro Tanaka, Abubaker Patan, Kyle Vittali, Prajit Rajkumar, Yasin El Abiead, Haoqi Nina Zhao, Paulo Wender Portal Gomes, Ipsita Mohanty, Car...,
Jul 24 2025,
In: Cell
Citations: 23
Presence of bromotyrosine alkaloids in marine sponges is independent of metabolomic and microbiome architectures
Ipsita Mohanty, Subhasish Tapadar, Samuel G. Moore, Jason S. Biggs, Christopher J. Freeman, David A. Gaul, Neha Garg, Vinayak Agarwal,
Mar 2021,
In: mSystems
Citations: 23
The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns
Rodolfo A. Salido, Haoqi Nina Zhao, Daniel McDonald, Helena Mannochio-Russo, Simone Zuffa, Renee E. Oles, Allegra T. Aron, Yasin El Abiead, Sawyer Farmer, Antonio González, Cameron Martino, Ipsita Mohanty, Ceth W. Parker, Lucas Patel, Paulo Wender Portal Gomes, Robin Schmid, Tara Schwartz, Jennifer...,
Apr 3 2025,
In: Cell
Citations: 20
Metatranscriptomics uncovers diurnal functional shifts in bacterial transgenes with profound metabolic effects
Stephany Flores Ramos, Nicole Siguenza, Wuling Zhong, Ipsita Mohanty, Amulya Lingaraju, R. Alexander Richter, Smruthi Karthikeyan, April L. Lukowski, Qiyun Zhu, Wilhan D.G. Nunes, Jasmine Zemlin, Zhenjiang Zech Xu, Jeff Hasty, Pieter C. Dorrestein, Satchidananda Panda, Rob Knight, Amir Zarrinpar,
Jul 9 2025,
In: Cell Host and Microbe
Citations: 19
Precursor-Guided Mining of Marine Sponge Metabolomes Lends Insight into Biosynthesis of Pyrrole-Imidazole Alkaloids
Ipsita Mohanty, Samuel G. Moore, Dongqi Yi, Jason S. Biggs, David A. Gaul, Neha Garg, Vinayak Agarwal,
Aug 21 2020,
In: ACS chemical biology
Citations: 18
