Francesca Chiaromonte

Contrasting pre-vaccine COVID-19 waves in Italy through functional data analysis
Tobia Boschi, Jacopo Di Iorio, Lorenzo Testa, Marzia A. Cremona, Francesca Chiaromonte, Dec 2026, In: Scientific reports
Date: Dec 2026

Mammalian mitochondrial DNA accumulates insertions and deletions with age in energetically demanding tissues
Edmundo Torres-Gonzalez, Barbara Arbeithuber, Nicholas Stoler, Marzia A. Cremona, Omar Shebl, Thomas Ebner, Irene Tiemann-Boege, Francisco J. Diaz, Francesca Chiaromonte, Kateryna D. Makova, Mar 1 2026, In: Molecular biology and evolution
Date: Mar 1 2026

Substitution Spectrum and Selection at G-quadruplexes in Great Ape Telomere-to-Telomere Genomes
Xinru Zhang, Saswat K. Mohanty, Francesca Chiaromonte, Kateryna D. Makova, Mar 2026, In: Genome biology and evolution
Date: Mar 2026

Fast, robust, and accurate anomaly detection for multivariate time series
Simone Tonini, Andrea Vandin, Francesca Chiaromonte, Daniele Licari, Fernando Barsacchi, 2026, In: Advances in Data Analysis and Classification
Date: 2026

Allele Frequency Selection and No Age-Related Increase in Human Oocyte Mitochondrial Mutations
Barbara Arbeithuber, Kate Anthony, Bonnie Higgins, Peter Oppelt, Omar Shebl, Irene Tiemann-Boege, Francesca Chiaromonte, Thomas Ebner, Kateryna D. Makova, Jan 2026, In: Obstetrical and Gynecological Survey
Date: Jan 2026

Doubly-robust functional average treatment effect estimation
Lorenzo Testa, Tobia Boschi, Francesca Chiaromonte, Edward H. Kennedy, Matthew Reimherr, Jan 1 2026, In: Journal of Causal Inference
Date: Jan 1 2026

Evolutionary dynamics of predicted G-quadruplexes in human and other great apes
Saswat K. Mohanty, Francesca Chiaromonte, Kateryna D. Makova, Dec 2025, In: Genome biology
Date: Dec 2025

Allele frequency selection and no age-related increase in human oocyte mitochondrial mutations
Barbara Arbeithuber, Kate Anthony, Bonnie Higgins, Peter Oppelt, Omar Shebl, Irene Tiemann-Boege, Francesca Chiaromonte, Thomas Ebner, Kateryna D. Makova, Aug 2025, In: Science Advances
Date: Aug 2025

Non-canonical DNA in human and other ape telomere-to-telomere genomes
Linnéa Smeds, Kaivan Kamali, Iva Kejnovská, Eduard Kejnovský, Francesca Chiaromonte, Kateryna D. Makova, Apr 24 2025, In: Nucleic acids research
Date: Apr 24 2025

Raided by the storm
Matteo Coronese, Federico Crippa, Francesco Lamperti, Francesca Chiaromonte, Andrea Roventini, Mar 2025, In: Journal of Environmental Economics and Management
Date: Mar 2025

Initial sequencing and comparative analysis of the mouse genome
Robert H. Waterston, Kerstin Lindblad-Toh, Ewan Birney, Jane Rogers, Josep F. Abril, Pankaj Agarwal, Richa Agarwala, Rachel Ainscough, Marina Alexandersson, Peter An, Stylianos E. Antonarakis, John Attwood, Robert Baertsch, Jonathon Bailey, Karen Barlow, Stephan Beck, Eric Berry, Bruce Birren, Toby ..., Dec 5 2002, In: Nature
Citations: 5,978

Sequence and comparative analysis of the chicken genome provide unique perspectives on vertebrate evolution
Ladeana W. Hillier, Webb Miller, Ewan Birney, Wesley Warren, Ross C. Hardison, Chris P. Ponting, Peer Bork, David W. Burt, Martien A.M. Groenen, Mary E. Delany, Jerry B. Dodgson, Asif T. Chinwalla, Paul F. Cliften, Sandra W. Clifton, Kimberly D. Delehaunty, Catrina Fronick, Robert S. Fulton, Tina A...., Dec 9 2004, In: Nature
Citations: 2,366

Genome sequence of the Brown Norway rat yields insights into mammalian evolution
Richard A. Gibbs, George M. Weinstock, Michael L. Metzker, Donna M. Muzny, Erica J. Sodergren, Steven Scherer, Graham Scott, David Steffen, Kim C. Worley, Paula E. Burch, Geoffrey Okwuonu, Sandra Hines, Lora Lewis, Christine Deramo, Oliver Delgado, Shannon Dugan-Rocha, George Miner, Margaret Morgan,..., Apr 1 2004, In: Nature
Citations: 1,820

Complete Khoisan and Bantu genomes from southern Africa
Stephan C. Schuster, Webb Miller, Aakrosh Ratan, Lynn P. Tomsho, Belinda Giardine, Lindsay R. Kasson, Robert S. Harris, Desiree C. Petersen, Fangqing Zhao, Ji Qi, Can Alkan, Jeffrey M. Kidd, Yazhou Sun, Daniela I. Drautz, Pascal Bouffard, Donna M. Muzny, Jeffrey G. Reid, Lynne V. Nazareth, Qingyu Wa..., Feb 18 2010, In: Nature
Citations: 326

Computational pan-genomics
Tobias Marschall, Manja Marz, Thomas Abeel, Louis Dijkstra, Bas E. Dutilh, Ali Ghaffaari, Paul Kersey, Wigard P. Kloosterman, Veli Mäkinen, Adam M. Novak, Benedict Paten, David Porubsky, Eric Rivals, Can Alkan, Jasmijn A. Baaijens, Paul I.W. De Bakker, Valentina Boeva, Raoul J.P. Bonnal, Francesca ..., Jan 1 2018, In: Briefings in bioinformatics
Citations: 322

Evidence for sharp increase in the economic damages of extreme natural disasters
Matteo Coronese, Francesco Lamperti, Klaus Keller, Francesca Chiaromonte, Andrea Roventini, Oct 22 2019, In: Proceedings of the National Academy of Sciences of the United States of America
Citations: 304

Qualitative network models and genome-wide expression data define carbon/ nitrogen-responsive molecular machines in Arabidopsis
Rodrigo A. Gutiérrez, Laurence V. Lejay, Alexis Dean, Francesca Chiaromonte, Dennis E. Shasha, Gloria M. Coruzzi, Jan 11 2007, In: Genome biology
Citations: 273

Contour regression
Bing Li, Hongyuan Zha, Francesca Chiaromonte, Aug 2005, In: Annals of Statistics
Citations: 261

Covariation in frequencies of substitution, deletion, transposition, and recombination during eutherian evolution.
Ross C. Hardison, Krishna M. Roskin, Shan Yang, Mark Diekhans, W. James Kent, Ryan Weber, Laura Elnitski, Jia Li, Michael O'Connor, Diana Kolbe, Scott Schwartz, Terrence S. Furey, Simon Whelan, Nick Goldman, Arian Smit, Webb Miller, Francesca Chiaromonte, David Haussler, Jan 2003, In: Genome Research
Citations: 244

The genome-wide determinants of human and chimpanzee microsatellite evolution
Yogeshwar D. Kelkar, Svitlana Tyekucheva, Francesca Chiaromonte, Kateryna D. Makova, Jan 2008, In: Genome Research
Citations: 210

Centers & Institutes

• Center for Computational Biology and Bioinformatics

• Bioinformatics and Genomics IGDP

• Personal Website
• Department of Statistics
• Google Scholar Profile
• Elsevier Pure Profile