The floral ABCs of Hydnora, one of the most bizarre parasitic plants in the world, and its autotrophic relatives of the order Piperales
Natalia Pabón-Mora, Favio González, Claude W. dePamphilis, Jay F. Bolin, Christoph Neinhuis, Juan F. Alzate, Stefan Wanke,
Dec 2025,
In: EvoDevo
Date: Dec 2025
A record-setting mitogenome in the holoparasitic plant Balanophorayakushimensis accompanied by exceptional loss of organellar DNA repair and recombination genes
Runxian Yu, Xueke Zhi, Luis Federico Ceriotti, Elizabeth Skippington, Danny W. Rice, Huei Jiun Su, Todd J. Barkman, Chenyu Sun, Ying Liu, Dongming Fang, Xiaoli Chen, Claude W. dePamphilis, Jeffrey P. Mower, M. Virginia Sanchez-Puerta, Jeffrey D. Palmer, Renchao Zhou,
Dec 2025,
In: BMC Biology
Date: Dec 2025
Chromosome level assembly and annotation of Cuscuta campestris Yunck. (“field dodder”), a model parasitic plant
Juan D. Cerda-Herrera, Huiting Zhang, Eric K. Wafula, Supral Adhikari, So Yon Park, Sarah B. Carey, Alex Harkess, Paula E. Ralph, James H. Westwood, Michael J. Axtell, Claude W. DePamphilis,
Oct 1 2025,
In: Annals of the Entomological Society of America
Date: Oct 1 2025
Local gene duplications drive extensive NLR copy number variation across multiple genotypes of Theobroma cacao
Noah P. Winters, Eric K. Wafula, Prakash R. Timilsena, Paula E. Ralph, Siela N. Maximova, Claude W. De Pamphilis, Mark J. Guiltinan, James H. Marden,
Sep 2025,
In: G3: Genes, Genomes, Genetics
Date: Sep 2025
The cacao gene atlas
Evelyn Kulesza, Patrick Thomas, Sarah F. Prewitt, Akiva Shalit-Kaneh, Eric Wafula, Benjamin Knollenberg, Noah Winters, Eddi Esteban, Asher Pasha, Nicholas Provart, Craig Praul, Lena Landherr, Claude dePamphilis, Siela N. Maximova, Mark J. Guiltinan,
Dec 2024,
In: BMC plant biology
Date: Dec 2024
A combination of conserved and diverged responses underlies Theobroma cacao’s defense response to Phytophthora palmivora
Noah P. Winters, Eric K. Wafula, Benjamin J. Knollenberg, Tuomas Hämälä, Prakash R. Timilsena, Melanie Perryman, Dapeng Zhang, Lena L. Sheaffer, Craig A. Praul, Paula E. Ralph, Sarah Prewitt, Mariela E. Leandro-Muñoz, Diego A. Delgadillo-Duran, Naomi S. Altman, Peter Tiffin, Siela N. Maximova, C...,
Dec 2024,
In: BMC Biology
Date: Dec 2024
Correction to
Li Qiong Chen, Xin Li, Xin Yao, De Zhu Li, Craig Barrett, Claude W. dePamphilis, Wen Bin Yu,
Jun 2024,
In: Plant molecular biology
Date: Jun 2024
Variations and reduction of plastome are associated with the evolution of parasitism in Convolvulaceae
Li Qiong Chen, Xin Li, Xin Yao, De Zhu Li, Craig Barrett, Claude W. dePamphilis, Wen Bin Yu,
Jun 2024,
In: Plant molecular biology
Date: Jun 2024
Hemiparasitism
David Smith, Todd J. Barkman, Claude W. dePamphilis,
Jan 1 2024,
In: Encyclopedia of Biodiversity, Third Edition
Date: Jan 1 2024
Transcriptomic approach to uncover dynamic events in the development of mid-season sunburn in apple fruit
Jessica M. Waite, Elizabeth A. Kelly, Huiting Zhang, Heidi L. Hargarten, Sumyya Waliullah, Naomi S. Altman, Claude W. dePamphilis, Loren A. Honaas, Lee Kalcsits,
Aug 2023,
In: G3: Genes, Genomes, Genetics
Date: Aug 2023
The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)
G. A. Tuskan, S. DiFazio, S. Jansson, J. Bohlmann, I. Grigoriev, U. Hellsten, M. Putnam, S. Ralph, S. Rombauts, A. Salamov, J. Schein, L. Sterck, A. Aerts, R. R. Bhalerao, R. P. Bhalerao, D. Blaudez, W. Boerjan, A. Brun, A. Brunner, V. Busov, M. Campbell, J. Carlson, M. Chalot, J. Chapman, G. L. Che...,
Sep 15 2006,
In: Science
Citations: 3,848
GetOrganelle
Jian Jun Jin, Wen Bin Yu, Jun Bo Yang, Yu Song, Claude W. Depamphilis, Ting Shuang Yi, De Zhu Li,
Sep 10 2020,
In: Genome biology
Citations: 3,358
Ancestral polyploidy in seed plants and angiosperms
Yuannian Jiao, Norman J. Wickett, Saravanaraj Ayyampalayam, André S. Chanderbali, Lena Landherr, Paula E. Ralph, Lynn P. Tomsho, Yi Hu, Haiying Liang, Pamela S. Soltis, Douglas E. Soltis, Sandra W. Clifton, Scott E. Schlarbaum, Stephan C. Schuster, Hong Ma, Jim Leebens-Mack, Claude W. Depamphilis,
May 5 2011,
In: Nature
Citations: 1,888
One thousand plant transcriptomes and the phylogenomics of green plants
James H. Leebens-Mack, Michael S. Barker, Eric J. Carpenter, Michael K. Deyholos, Matthew A. Gitzendanner, Sean W. Graham, Ivo Grosse, Zheng Li, Michael Melkonian, Siavash Mirarab, Martin Porsch, Marcel Quint, Stefan A. Rensing, Douglas E. Soltis, Pamela S. Soltis, Dennis W. Stevenson, Kristian K. U...,
Oct 31 2019,
In: Nature
Citations: 1,373
The evolution of the plastid chromosome in land plants
Susann Wicke, Gerald M. Schneeweiss, Claude W. dePamphilis, Kai F. Müller, Dietmar Quandt,
Jul 2011,
In: Plant molecular biology
Citations: 1,294
Phylotranscriptomic analysis of the origin and early diversification of land plants
Norman J. Wickett, Siavash Mirarab, Nam Nguyen, Tandy Warnow, Eric Carpenter, Naim Matasci, Saravanaraj Ayyampalayam, Michael S. Barker, J. Gordon Burleigh, Matthew A. Gitzendanner, Brad R. Ruhfel, Eric Wafula, Joshua P. Der, Sean W. Graham, Sarah Mathews, Michael Melkonian, Douglas E. Soltis, Pamel...,
Nov 11 2014,
In: Proceedings of the National Academy of Sciences of the United States of America
Citations: 1,055
Polyploidy and angiosperm diversification
Douglas E. Soltis, Victor A. Albert, Jim Leebens-Mack, Charles D. Bell, Andrew H. Paterson, Chunfang Zheng, David Sankoff, Claude W. DePamphilis, P. Kerr Wall, Pamela S. Soltis,
Jan 2009,
In: American journal of botany
Citations: 1,038
The minimum information about a genome sequence (MIGS) specification
Dawn Field, George Garrity, Tanya Gray, Norman Morrison, Jeremy Selengut, Peter Sterk, Tatiana Tatusova, Nicholas Thomson, Michael J. Allen, Samuel V. Angiuoli, Michael Ashburner, Nelson Axelrod, Sandra Baldauf, Stuart Ballard, Jeffrey Boore, Guy Cochrane, James Cole, Peter Dawyndt, Paul De Vos, Cla...,
May 2008,
In: Nature Biotechnology
Citations: 1,028
Analysis of 81 genes from 64 plastid genomes resolves relationships in angiosperms and identifies genome-scale evolutionary patterns
Robert K. Jansen, Zhengqiu Cai, Linda A. Raubeson, Henry Daniell, Claude W. Depamphilis, James Leebens-Mack, Kai F. Müller, Mary Guisinger-Bellian, Rosemarie C. Haberle, Anne K. Hansen, Timothy W. Chumley, Seung Bum Lee, Rhiannon Peery, Joel R. McNeal, Jennifer V. Kuehl, Jeffrey L. Boore,
Dec 4 2007,
In: Proceedings of the National Academy of Sciences of the United States of America
Citations: 1,024
The draft genome of the transgenic tropical fruit tree papaya (Carica papaya Linnaeus)
Ray Ming, Shaobin Hou, Yun Feng, Qingyi Yu, Alexandre Dionne-Laporte, Jimmy H. Saw, Pavel Senin, Wei Wang, Benjamin V. Ly, Kanako L.T. Lewis, Steven L. Salzberg, Lu Feng, Meghan R. Jones, Rachel L. Skelton, Jan E. Murray, Cuixia Chen, Wubin Qian, Junguo Shen, Peng Du, Moriah Eustice, Eric Tong, Haib...,
Apr 24 2008,
In: Nature
Citations: 907
