MGA
Zhenmiao Zhang, Marcus W. Fedarko, Anton Bankevich, Pavel A. Pevzner,
Dec 2026,
In: Genome biology
Date: Dec 2026
CloseRead
Yixin Zhu, Corey Watson, Yana Safonova, Matt Pennell, Anton Bankevich,
Dec 2025,
In: Genome biology
Date: Dec 2025
Comparative Analysis of Mammalian Adaptive Immune Loci Revealed Spectacular Divergence and Common Genetic Patterns
Mariia Pospelova, Katalin Voss, Anton Zamyatin, Corey T. Watson, Klaus Peter Koepfli, Anton Bankevich, Matt Pennell, Yana Safonova,
Jul 1 2025,
In: Molecular biology and evolution
Date: Jul 1 2025
Complete sequencing of ape genomes
Dong Ahn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar, Dmitry Antipov, Brandon D. Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M. Storer, Jiadong Lin, Abigail N. Sequeira, Riley J. Mangan, Glenn Hickey, Graciela Mon...,
2025,
In: Nature
Date: 2025
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
Anton Bankevich, Andrey V. Bzikadze, Mikhail Kolmogorov, Dmitry Antipov, Pavel A. Pevzner,
Jul 2022,
In: Nature Biotechnology
Date: Jul 2022
ORFograph
Tatiana Dvorkina, Anton Bankevich, Alexei Sorokin, Fan Yang, Boahemaa Adu-Oppong, Ryan Williams, Keith Turner, Pavel A. Pevzner,
Dec 2021,
In: Microbiome
Date: Dec 2021
Mosaicflye
Anton Bankevich, Pavel Pevzner,
2020,
In: Research in Computational Molecular Biology - 24th Annual International Conference, RECOMB 2020, Proceedings
Date: 2020
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marl...,
Oct 31 2019,
In: Genome biology
Date: Oct 31 2019
CloudSPAdes
Ivan Tolstoganov, Anton Bankevich, Zhoutao Chen, Pavel A. Pevzner,
Jul 15 2019,
In: Bioinformatics
Date: Jul 15 2019
Joint Analysis of Long and Short Reads Enables Accurate Estimates of Microbiome Complexity
Anton Bankevich, Pavel A. Pevzner,
Aug 22 2018,
In: Cell Systems
Date: Aug 22 2018
SPAdes
Anton Bankevich, Sergey Nurk, Dmitry Antipov, Alexey A. Gurevich, Mikhail Dvorkin, Alexander S. Kulikov, Valery M. Lesin, Sergey I. Nikolenko, Son Pham, Andrey D. Prjibelski, Alexey V. Pyshkin, Alexander V. Sirotkin, Nikolay Vyahhi, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevzner,
May 1 2012,
In: Journal of Computational Biology
Citations: 21,756
Assembling single-cell genomes and mini-metagenomes from chimeric MDA products
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey A. Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey D. Prjibelski, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Scott R. Clingenpeel, Tanja Woyke, Jeffrey S. McLean, Roger Lasken, Glenn Tesler, Max A. Alekseyev, Pave...,
Oct 1 2013,
In: Journal of Computational Biology
Citations: 1,027
Assembling genomes and mini-metagenomes from highly chimeric reads
Sergey Nurk, Anton Bankevich, Dmitry Antipov, Alexey Gurevich, Anton Korobeynikov, Alla Lapidus, Andrey Prjibelsky, Alexey Pyshkin, Alexander Sirotkin, Yakov Sirotkin, Ramunas Stepanauskas, Jeffrey McLean, Roger Lasken, Scott R. Clingenpeel, Tanja Woyke, Glenn Tesler, Max A. Alekseyev, Pavel A. Pevz...,
2013,
In: Research in Computational Molecular Biology - 17th Annual International Conference, RECOMB 2013, Proceedings
Citations: 599
ExSPAnder
Andrey D. Prjibelski, Irina Vasilinetc, Anton Bankevich, Alexey Gurevich, Tatiana Krivosheeva, Sergey Nurk, Son Pham, Anton Korobeynikov, Alla Lapidus, Pavel A. Pevzner,
Jun 15 2014,
In: Bioinformatics
Citations: 110
Comparison of carnivore, omnivore, and herbivore mammalian genomes with a new leopard assembly
Soonok Kim, Yun Sung Cho, Hak Min Kim, Oksung Chung, Hyunho Kim, Sungwoong Jho, Hong Seomun, Jeongho Kim, Woo Young Bang, Changmu Kim, Junghwa An, Chang Hwan Bae, Youngjune Bhak, Sungwon Jeon, Hyejun Yoon, Yumi Kim, Je Hoon Jun, Hye Jin Lee, Suan Cho, Olga Uphyrkina, Aleksey Kostyria, John Goodrich,...,
Oct 11 2016,
In: Genome biology
Citations: 109
Complete sequencing of ape genomes
Dong Ahn Yoo, Arang Rhie, Prajna Hebbar, Francesca Antonacci, Glennis A. Logsdon, Steven J. Solar, Dmitry Antipov, Brandon D. Pickett, Yana Safonova, Francesco Montinaro, Yanting Luo, Joanna Malukiewicz, Jessica M. Storer, Jiadong Lin, Abigail N. Sequeira, Riley J. Mangan, Glenn Hickey, Graciela Mon...,
2025,
In: Nature
Citations: 91
Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads
Anton Bankevich, Andrey V. Bzikadze, Mikhail Kolmogorov, Dmitry Antipov, Pavel A. Pevzner,
Jul 2022,
In: Nature Biotechnology
Citations: 87
DipSPAdes
Yana Safonova, Anton Bankevich, Pavel A. Pevzner,
Jun 1 2015,
In: Journal of Computational Biology
Citations: 56
Optimizing sequencing protocols for leaderboard metagenomics by combining long and short reads
Jon G. Sanders, Sergey Nurk, Rodolfo A. Salido, Jeremiah Minich, Zhenjiang Z. Xu, Qiyun Zhu, Cameron Martino, Marcus Fedarko, Timothy D. Arthur, Feng Chen, Brigid S. Boland, Greg C. Humphrey, Caitriona Brennan, Karenina Sanders, James Gaffney, Kristen Jepsen, Mahdieh Khosroheidari, Cliff Green, Marl...,
Oct 31 2019,
In: Genome biology
Citations: 53
TruSPAdes
Anton Bankevich, Pavel A. Pevzner,
Feb 25 2016,
In: Nature methods
Citations: 33
