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Faculty Directory

Meet the faculty and researchers who contribute to our interdisciplinary community.

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James Adair

  • Professor of Material Science and Engineering

Nanoscale materials and phenomena for biological, optical and structural applications, property manipulation via novel. . .

Istvan Albert

  • Research Professor of Bioinformatics

Bioinformatics, large scale biological data analysis, microarrays and sequence analysis. Scientific programming, algorithm. . .

Reka Albert

  • Distinguished Professor of Physics and Biology

Biological physics and network modeling.

Sally Assmann

  • Waller Professor of Biology

Molecular biology of plant G-proteins and kinases. Phytohormone regulation of signal transduction and RNA processing. Second. . .

Michael Axtell

  • Professor of Biology
  • Louis and Hedwig Sternberg Chair in Plant Biology

Discovery and characterization of plant microRNAs and siRNAs. Functions of microRNAs and siRNAs in the evolution of plant. . .

Lu Bai

  • Professor of Biochemistry and Molecular Biology
  • Professor of Physics

Single cell / single molecule study of chromatin and gene regulation.

Anton Bankevich

  • Assistant Professor of Computer Science and Engineering

Le Bao

  • Professor of Statistics

Bayesian methods, data mining, computational methods, applications in health, environmental and social sciences.

Colin Barnstable

  • Professor and Chair of Neural Behavioral Sciences

How interacting networks of transcription factors and signal transduction molecules guide the development of precursor/stem. . .

Arthur Berg

  • Professor of Public Health Sciences, Statistics, Surgery, Neurosurgery, and Family & Community Medicine

Unlocking the mysteries of DNA and its connection to human health.

Philip Bevilacqua

  • Co-Director, Center for RNA Molecular Biology
  • Distinguished Professor of Chemistry and of Biochemistry and Molecular Biology

RNA folding in vivo and genome-wide; RNA regulation of gene expression; Ribozyme Mechanism; roles RNA may have played in the. . .

Jordan Bisanz

  • Assistant Professor of Biochemistry and Molecular Biology

The interface of microbiology and bioinformatics, with approaches including genomics and metabolomics to investigate the. . .

Seth Bordenstein

  • Director of the One Health Microbiome Center
  • Huck Chair in Microbiome Sciences

The evolutionary and genetic principles that shape symbiotic interactions between animals, microbes, and viruses and the. . .

James Broach

  • Distinguished Professor and Chair of Biochemistry and Molecular Biology

Liana Burghardt

  • Director of the Center for Root and Rhizosphere Biology
  • Huck Early Career Chair of Root Biology and Rhizosphere Interactions

Plant-microbe-climate interactions; the evolution and ecology of legumes and nitrogen-fixing rhizobia; the genomic basis and. . .

Laura Carrel

  • Professor of Biochemistry and Molecular Biology

Genetic, epigenetic, and genomic regulation of expression on the mammalian X chromosome.

Keith Cheng

  • Distinguished Professor of Pathology and Laboratory Medicine, of Biochemistry and Molecular Biology, and of Pharmacology

Computational phenomics, image informatics, and "Geometry of Life" based on x-ray histotomography, population, genomic, and. . .

Francesca Chiaromonte

  • Huck Chair in Statistics for the Life Sciences
  • Professor of Statistics

Developing methods for the analysis of large, high-dimensional and complex data.

Surinder Chopra

  • Professor of Maize Genetics

Regulation of flavonoid biosynthesis during plant development and plant-pathogen interaction. Epigenetic regulation and. . .

Emily Davenport

  • Assistant Professor of Biology

Understanding the complex relationship humans have with our microbiomes, using high-throughput sequencing technologies and. . .

Claude dePamphilis

  • Director of the Center for Parasitic and Carnivorous Plants
  • Huck Distinguished Chair in Plant Biology and Evolutionary Genomics

Genomics, bioinformatics, and molecular evolution. Origin and diversification of flowers and developmental pathways.. . .

Sinisa Dovat

  • Professor and Vice Chair for Basic Science Research, Department of Pediatrics
  • Professor of Biochemistry and Molecular Biology and of Pharmacology

Investigate the role of lymphoid master regulator, IKZF1/Ikaros, in the development of acute lymphoblastic leukemia (ALL);. . .

Kristin Eckert

  • Professor of Pathology and Laboratory Medicine and of Biochemistry and Molecular Biology

Mechanisms of human cell mutagenesis and repetitive DNA replication in relation to genome evolution.

Lindsay Fernandez-Rhodes

  • Assistant Professor of Biobehavioral Health

Erika Ganda

  • Emphasis Area Representative, Microbiome Sciences
  • Associate Professor of Food Animal Microbiomes

Developing practical ways to leverage the microbiome to improve food safety and improve food production animals' production. . .

David Geiser

  • Professor of Mycology

Genomics of fungi, applied to the evolution of plant and animal disease, toxin production, and beneficial roles. Fungal. . .

Santhosh Girirajan

  • Professor of Genomics
  • Professor of Anthropology

Understanding the genetic basis of neurodevelopmental disorders.

Jessica Grembi

  • Assistant Professor of Pharmacology

The Grembi lab studies the host-microbiota interplay, with a particular focus on the small intestine, where 90% of nutrient. . .

Mark Guiltinan

  • Director, Plant Institute
  • J. Franklin Styer Professor of Horticultural Botany

Plant functional genomics, metabolomics and biotechnology. Identification of key genes for disease resistance and important. . .

Wenrui Hao

  • Director of the Center for Mathematical Biology
  • Professor of Mathematics

Ross Hardison

  • Associate Director of the Genome Sciences Institute
  • T. Ming Chu Professor of Biochemistry and Molecular Biology

Regulation of gene expression during development.

Heather Hines

  • Interim Director, Center for Pollinator Research
  • Interim Director, Insect Biodiversity Center

Applies genomic, transcriptomic, phylogenomic, and bioinformatic approaches to study the evolution and genetics of diverse. . .

Vasant Honavar

  • Huck Chair in Biomedical Data Sciences and AI
  • Professor and Edward Frymoyer Chair of Information Sciences and Technology

Statistical machine learning algorithms for predictive modeling; modeling and inference of biological networks;. . .

Judie Howrylak

  • Assistant Professor of Medicine, Public Health Sciences, and Biochemistry and Molecular Biology

Christian Huber

  • Associate Professor of Biology

How evolutionary mechanisms such as mutation, recombination, and natural selection shape genetic diversity and the. . .

Wen Jiang

  • Faculty Advocate of the Cryo-Electron Microscopy Core Facility
  • Professor of Biochemistry & Molecular Biology

Seogchan Kang

  • Professor of Plant Pathology & Environmental Microbiology

Genetic and cellular mechanisms underpinning plant-fungal interactions with Arabidopsis thaliana and Fusarium oxysporum as a. . .

Vivek Kapur

  • Huck Distinguished Chair in Global Health
  • Professor of Microbiology and Infectious Diseases

The basic mechanisms by which pathogenic microbes successfully infect, colonize, and cause disease in their hosts.

David Kennedy

  • Associate Professor of Biology

Ecology and evolution of infectious diseases, with particular interest in how disease dynamics influence pathogen emergence,. . .

Daniel Kifer

  • Professor of Computer Science & Engineering

David Koslicki

  • Chair, Intercollege Graduate Degree Program in Bioinformatics and Genomics
  • Associate Professor of Computer Science and Engineering and Biology

Developing efficient algorithms to extract insight from high-throughput sequencing data.

Jasna Kovac

  • Lester Earl and Veronica Casida Career Development Professor of Food Safety
  • Associate Professor of Food Science

Integrating epidemiological, microbiological, molecular and omics methods to better understand microbial pathogenic. . .

Jesse Lasky

  • Professor of Biology
  • Director, Penn State (PAC) Herbarium

Ecological and evolutionary genomics, genetic and ecophysiological basis of adaptation to environmental stress, evolutionary. . .

Nina Lauharatanahirun

  • Assistant Professor of Biobehavioral Health and Biomedical Engineering

Using computational modeling, behavioral economic paradigms, and functional neuroimaging (fMRI/EEG) to understand the neural. . .

Arthur Lesk

  • Professor of Biology and of Biochemistry & Molecular Biology

Qunhua Li

  • Associate Chair, Intercollege Graduate Degree Program in Bioinformatics and Genomics
  • Professor of Statistics

Developing statistical and computational methods for analyzing complex omics data and improving quality and reproducibility. . .

Dajiang Liu

  • Co-Chair, Intercollege Graduate Degree Program in Bioinformatics and Genomics
  • Professor of Public Health Sciences and Biochemistry and Molecular Biology

Developing statistical and AI methods and experimental approaches to integrate multi-omics data with GWAS to study host x. . .

Wansheng Liu

  • Professor of Genomics

Functional annotation of farm animal genomes, structure and function of mammalian sex (X and Y) chromosome, spermatogenesis. . .

Yanxi Liu

  • Associate Professor of Computational Science and Engineering

Manuel Llinás

  • Ernest C. Pollard Professor in Biotechnology

Understanding the molecular mechanisms of gene regulation and metabolism in the malaria parasite Plasmodium falciparum using. . .

Margarita Lopez-Uribe

  • Associate Professor of Entomology

How environmental change and human management shape bee health and long-term persistence of their populations in agricultural. . .

Hong Ma

  • Huck Chair in Plant Reproductive Development and Evolution
  • Professor of Biology

Plant development under favorable and stressful conditions; phylogeny and evolutionary biology of plant groups containing. . .

Kamesh Madduri

  • Associate Professor of Computer Science and Engineering

Computational biology, algorithms, and high-performance computing.

Shaun Mahony

  • Professor of Biochemistry & Molecular Biology

We apply neural networks and other machine learning approaches to understand how transcription factors control cellular. . .

Kateryna Makova

  • Director of the Center for Medical Genomics
  • Professor of Biology

Molecular evolution, population genetics, evolutionary genomics, bioinformatics, and human genetics.

Costas Maranas

  • Donald B. Broughton Professor of Chemical Engineering

Computational studies of metabolism and gene regulation.

Paul Medvedev

  • Director of the Center for Computational Biology and Bioinformatics
  • Professor of Computer Science and Engineering

Please see the researcher's homepage at https://medvedevgroup.com/.

Anton Nekrutenko

  • Dorothy Foher Huck and J. Lloyd Huck Chair in Genomics, Professor of Biochemistry and Molecular Biology

Evolution of overlapping reading frames in eukaryotic genomes.

William Noid

  • Assistant Professor of Chemistry

Edward O’Brien

  • Professor of Chemistry

Developing and applying Physical Bioinformatic techniques to measure rates of translation transcriptome-wide and their. . .

Denise Okafor

  • Huck Early Career Chair in Biophysics
  • Associate Professor of Biochemistry and Molecular Biology

Structural mechanisms of signaling and regulation in protein complexes.

Andrew Patterson

  • Associate Director, Huck Institutes of the Life Sciences
  • Professor of Molecular Toxicology

The Patterson lab is focused on understanding the host-metabolite-microbiome axis

Elizabeth Proctor

  • Associate Professor of Neurosurgery and of Pharmacology

Systems biology of complex disease. Integration of heterogeneous data types across length scales.

Tanya Renner

  • Associate Professor of Entomology

Evolution of chemical and structural defense. Molecular evolution, evolutionary genomics, and transcriptomics. Origins and. . .

Yana Safonova

  • Assistant Professor of Electrical Engineering and Computer Science

Stephen Schaeffer

  • Professor of Biology

Population Genetics and Genomics of Chromosomal Rearrangements in Drosophila

Mingfu Shao

  • Associate Professor of Computer Science and Engineering

Our research interests are designing algorithms and developing methods for solving the various challenging problems in. . .

Mark Shriver

  • Professor of Biological Anthropology

Human population genomics and complex disease mapping.

Justin Silverman

  • Associate Professor of Information Sciences and Technology

Statistical methods for the analysis of biomedical data (or any other interesting data/questions)

Aleksandra Slavkovic

  • Huck Chair in Data Privacy and Confidentiality
  • Professor of Statistics and of Public Health Sciences

Methodological developments in the area of data privacy and confidentiality in the context of small and large scale surveys,. . .

Hyebin Song

  • Assistant Professor of Statistics

Moriah Szpara

  • Professor of Biology

How genetic variation influences the outcomes of viral infection, particularly for neurotropic viruses such as herpes simplex. . .

Zachary Szpiech

  • Associate Professor of Biology

Population and evolutionary genetics, with applications to medical genetics, anthropology, and conservation

David Toews

  • Associate Professor of Biology

Yasin Uzun

  • Assistant Professor of Pediatrics

Developing and applying systems biology approaches to better understand gene regulation at the molecular level in development. . .

Yogasudha Veturi

  • Assistant Professor of Biobehavioral Health and of Statistics

Developing novel statistical and machine learning methods to better understand shared genetics between complex human diseases. . .

Jennifer Wagner

  • Assistant Professor of Law, Policy, and Engineering

Promoting the international human right to science in genetics/omics, precision medicine, and digital health technologies;. . .

James Wang

  • Professor of Information Science and Technology

Modeling of objects, concepts, aesthetics, and emotions in big visual data from various domains.

Laura Weyrich

  • Professor of Anthropology

Reconstructing ancient oral microbiomes and supporting ancient DNA analysis of past humans, environments, and animals.

Ruobo Zhou

  • Assistant Professor of Chemistry

Quantitatively and functionally understanding the compartmentalization and spatiotemporal organization of protein-protein and. . .