The Huck Institutes of the Life Sciences

Robust timekeeping in circadian rhythm: From genes to cells to systems

Francis J. Doyle III (University of California, Santa Barbara)

When: Thursday, April 10, 2008 - 10:00am - April 10, 2008 - 11:00am
Where: 102 Chemistry, University Park
Name: Padma Raghavan

Natural control systems are paragons of optimality. Over millennia, these architectures have been honed to achieve robust regulation of a myriad of processes at the levels of genes, proteins, cells, and entire systems. One of the more interesting aspects of these circuits, and one of the challenges for control research, is unraveling the multi-scale, hierarchical control that achieves robust performance in the face of stochastic perturbations. These perturbations arise from both intrinsic sources (e.g., inherent variability in the transcription machinery), and extrinsic sources (e.g., environmental fluctuations). Robustness in key performance variables to particular perturbations is shown to be achieved at the expense of strong sensitivity to other perturbations.

In this talk, several biological examples will be used to highlight robustly regulated behavior, including: circadian timekeeping in neuronal cells; the unfolded protein response and its connection to Alzheimer s and diabetes; and programmed cell death (apoptosis). A key insight from these examples is that control at the cellular network level guides many properties in a manner that is distinct from control at the intracellular level.

A variety of tools from systems theory are employed in this research, including the structured singular value, sensitivity measures (with extensions to limit cycle behavior and stochastic systems), and discrete stochastic simulations. Those tools complement the high throughput biological assays that are used to interrogate the natural control circuits.