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Center for Medical Genomics

Center for Medical Genomics

Bringing together researchers in medicine, genomics, molecular biology and statistics to advance basic genomic research and translate that research into new diagnostic, therapeutic, and preventive medical strategies

Mission

The mission of the Huck Institutes' Center for Medical Genomics (CMG) is to bring together researchers from diverse areas of scientific expertise to:

  1. Acquire and analyze data on patients’ genomes, particularly in conjunction with other data sources and basic genome biology concepts
  2. Facilitate translation of the resulting knowledge into medical practice

Integrating fundamental genome biology concepts with computational approaches underlies the emerging field of translational genomics.

About medical genomics

Medical genomics specifically deals with the acquisition and use of information concerning individual patient genomes for preventing, diagnosing, treating and curing diseases.

Utilizing genomics for personalized medicine requires extensive cross-disciplinary interactions, in order to:

  1. Apply computational and statistical approaches
  2. Comprehend basic science concepts (i.e. chromosome behavior, mutational dynamics and the epigenome)
  3. Understand medical principles and practices

For example, applying tumor sequencing information for personalized oncology requires a multidisciplinary tumor board of team members from genomics, bioinformatics, pathology, clinical genetics, bioethics and clinical oncology.

Interdisciplinary collaboration

Since the Center's inception in 2008, its members have worked to coalesce interdisciplinary teams around two major areas of research:

  1. Mitochondrial genetics
  2. Chromosome stability

Currently, the Center includes researchers from seven laboratories (three from Hershey and four from University Park).

Our activities have built strong bridges between the University Park and Hershey campuses, and resulted in multiple interdisciplinary peer-reviewed publications and grant applications.

We have implemented regular monthly, cross-campus research meetings of members, and hosted annual retreats to increase the visibility of our group.

Our second annual retreat in May 2010 was highly successful, drawing 71 participants from 16 different departments, representing both Hershey and University Park campuses.

Moreover, our use of prior Center funding has advanced the medical genomics resources available to the university community.

Our activities have also resulted in the cross-training of several graduate students, whose research resulted in new computational programs that have been implemented in Galaxy.

Recent publications
Endangered horse species may be older by 150 millennia A team of researchers led by Kateryna Makova and including Anton Nekrutenko has discovered an evolutionary divergence from the domestic horse that is exponentially more ancient than previously thought.
News
Researchers using a new algorithmic process for a heuristic embedding strategy they call “Adaptive GDDA-BLAST” can now see the results of their computations 19 times faster than with their previous computational method. The new method has the added benefits of detecting structural homology in highly divergent protein sequences and isolating secondary structural elements of transmembrane and ankyrin-repeat domains, with possibly wide-ranging impacts on human health and disease studies. Computations 19x faster with new adaptive algorithm - Full article
We seek computer and information scientists, social scientists, life scientists, physicists, mathematicians, statisticians and biomedical researchers interested in analyzing genomic data, undertaking systems and functional genomics and in applying these results to a broad range of biological problems. Faculty appointments in systems and computational genomics - Full article